View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_2D_high_11 (Length: 245)
Name: NF1504_2D_high_11
Description: NF1504_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_2D_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 38056734 - 38056518
Alignment:
| Q |
16 |
tgcctgtgtttatcatcgctctctcccattgcttccccatcaatggatccaggtatcctaattaaaccaattgatttgtttatgatagaggattggaaag |
115 |
Q |
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| T |
38056734 |
tgcctgtgtttatcatcgctctctctcattgcttccccatcaatggatccaggtatcctaattaaaccaattgatttgtttatgatagaggattg-aaag |
38056636 |
T |
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| Q |
116 |
cgattcaactaaattatattaggcgtttctggaaaattgattgattttacatgatttgataaatttcaacaattaaattctcacggtccaatcaaaatct |
215 |
Q |
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| T |
38056635 |
cgattcaactaaattatattaggcgtttctggaaaattgattgattttatatgatttgataaatttcaacaatcaaattctcacggtccaatcaaaatct |
38056536 |
T |
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| Q |
216 |
tccatgattcacttcttc |
233 |
Q |
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|||||||||||||||||| |
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| T |
38056535 |
tccatgattcacttcttc |
38056518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 34708913 - 34708863
Alignment:
| Q |
33 |
gctctctcccattgcttccccatcaatggatccaggtatcctaattaaacca |
84 |
Q |
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| T |
34708913 |
gctctctcccattgcttccc-atcaatggatccaggtagcataattaaacca |
34708863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 6476601 - 6476535
Alignment:
| Q |
63 |
tccaggtatcctaattaaaccaattgatttgtttatgatagaggattggaaagcgattcaactaaatt |
130 |
Q |
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| T |
6476601 |
tccaggtaccataattaaaccaattgagttgtttatgatataggagtgg-aagcaattcaacttaatt |
6476535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 10554825 - 10554891
Alignment:
| Q |
63 |
tccaggtatcctaattaaaccaattgatttgtttatgatagaggattggaaagcgattcaactaaatt |
130 |
Q |
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| T |
10554825 |
tccaggtaccataattaaaccaattgagttgtttatgatataggagtgg-aagcaattcaacttaatt |
10554891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 4939674 - 4939888
Alignment:
| Q |
18 |
cctgtgtttatcatcgctctctcccattgcttccccatcaatggatccaggtatcctaattaaaccaattgatttgtttatgatagaggattggaaagcg |
117 |
Q |
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| T |
4939674 |
cctgtgtttatcatcgctctctcctgttgcttccccatcaatggatccaggtatcctaattaaaccaattgagttgtttatgatagaggattggaa-gcg |
4939772 |
T |
|
| Q |
118 |
attcaactaaattatattaggcgtttctggaaaattgattgattttacatgatttgataaatttcaacaattaaattctcacggtccaatcaaaatcttc |
217 |
Q |
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| T |
4939773 |
attcaactaaattctattaggcgtttttggaaaattgtttgattttacatgatttgataaatttcaacaatcaaattctcacggtccaatcaaaatcttc |
4939872 |
T |
|
| Q |
218 |
catgattcacttcttc |
233 |
Q |
| |
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|||||||||||||||| |
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| T |
4939873 |
catgattcacttcttc |
4939888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 19080664 - 19080730
Alignment:
| Q |
63 |
tccaggtatcctaattaaaccaattgatttgtttatgatagaggattggaaagcgattcaactaaatt |
130 |
Q |
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| T |
19080664 |
tccaggtaccataattaaaccaattgagttgtttatgatataggagtgg-aagcaattcaacttaatt |
19080730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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