View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_2D_high_12 (Length: 228)
Name: NF1504_2D_high_12
Description: NF1504_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_2D_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 51303089 - 51302875
Alignment:
| Q |
1 |
cccattaagaggttccatatttatgttgttatcatataagacataaaacaaatgcttcatcaaatcaatgtaacagtttcccacactctta-gagaggag |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||| |||||||||| |||||||| |
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| T |
51303089 |
cccattaagaggttccatatttatgttgttatcatacaagacataaaacaaatgcttcatcaactcaatgtaacggtttctcacactcttaagagaggag |
51302990 |
T |
|
| Q |
100 |
aatcaatgtgcagactatatgacaaaactttgcgcttcttatgatgttgagtttctgcttcatgattccccctgctggtcttattgatctcctaagaagc |
199 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
51302989 |
aatcaatgtgcagactatatgacaaagcttgaagcttcttatgatgttgagtttctgcttcatgattccccctgctggccttgttgatctcctaagaagc |
51302890 |
T |
|
| Q |
200 |
gatgtcgttggccctt |
215 |
Q |
| |
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|| ||||||||||||| |
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| T |
51302889 |
ga-gtcgttggccctt |
51302875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 5204059 - 5203941
Alignment:
| Q |
1 |
cccattaagaggttccatatttatgttgttatcatataagacataaaacaaatgcttcatcaaatcaatgtaacagtttcccacactcttagagaggaga |
100 |
Q |
| |
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|||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| || |
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| T |
5204059 |
cccattgagaggttccatatctatgctgttatcatacaagacataaaacaaatgcttcaacaaatcaatgtaacggtttctcacactcttagagagggga |
5203960 |
T |
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| Q |
101 |
atcaatgtgcagactatat |
119 |
Q |
| |
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||||||||||| ||||||| |
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| T |
5203959 |
atcaatgtgcaaactatat |
5203941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 40789319 - 40789506
Alignment:
| Q |
25 |
gttgttatcatataagacataaaacaaatgcttcatcaaatcaatgtaacagtttcccacactcttagagaggagaatcaatgtgcagactatatgacaa |
124 |
Q |
| |
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|||||| |||||| |||||| |||||| | ||||| |||| |||| |||| ||||| | |||||||||||||| ||| || ||||||||||| ||| ||| |
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| T |
40789319 |
gttgttctcatatgagacatgaaacaatttcttcaacaaaccaatctaacggtttctcgcactcttagagaggggaaccattgtgcagactacatggcaa |
40789418 |
T |
|
| Q |
125 |
aactttgcgcttcttatgatgttgagtttctgcttcatgat-tccccctgctggtcttattgatctcctaagaagcgatgtcgttggc |
211 |
Q |
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| ||| ||||||| | |||| || |||| ||||||||| ||||| | || ||||| || |||| ||||| |||||||||| |||| |
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| T |
40789419 |
agcttgaagcttcttctaatgtggaacttcttcttcatgatgtccccttacttgtcttgttaatcttctaagtagcgatgtcgctggc |
40789506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 10470186 - 10470080
Alignment:
| Q |
15 |
ccatatttatgttgttatcatataagacataaaacaaatgcttcatcaaatcaatgtaacagtttcccacactcttagagaggagaatcaatgtgcagac |
114 |
Q |
| |
|
|||||| ||||| ||| |||| |||| ||||||||||||||||| |||| |||| ||| ||||| |||||||||||||||| ||| || ||||||||| |
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| T |
10470186 |
ccatatctatgtggttctcatccaagagataaaacaaatgcttcaacaaaccaatccaacggtttctcacactcttagagaggggaaccattgtgcagac |
10470087 |
T |
|
| Q |
115 |
tatatga |
121 |
Q |
| |
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|| |||| |
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|
| T |
10470086 |
tacatga |
10470080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 10484126 - 10484002
Alignment:
| Q |
1 |
cccattaagaggttccatatttatgttgttatcatataagacataaaacaaatgcttcatcaaatcaatgtaacagtttcccacactcttagagaggaga |
100 |
Q |
| |
|
|||||| |||| | |||||| | ||||||| |||| |||| ||||||| ||||||||| |||||||||| |||| |||| |||||||||||||| | || |
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|
| T |
10484126 |
cccattgagagataccatatctctgttgttctcatccaagagataaaaccaatgcttcaacaaatcaatgcaacaatttctcacactcttagagaaggga |
10484027 |
T |
|
| Q |
101 |
atcaatgtgcagactatatgacaaa |
125 |
Q |
| |
|
| || || |||||||| ||| |||| |
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|
| T |
10484026 |
accattgggcagactacatggcaaa |
10484002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 38224614 - 38224741
Alignment:
| Q |
22 |
tatgttgttatcatataagacataaaacaaatgcttcatcaaatcaatgtaacagtttcccacactcttagagaggagaatcaatgtgcagactatatga |
121 |
Q |
| |
|
||||||||| |||| |||||||||| ||| ||||||| || | || ||||| ||||| ||||||||||||||| | ||||| |||||||||| ||| |
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| T |
38224614 |
tatgttgttctcatcaaagacataaagcaattgcttcaccataccagcgtaacggtttctcacactcttagagagaaaaatcagtgtgcagacttaatgg |
38224713 |
T |
|
| Q |
122 |
caaaactttgcgcttcttatgatgttga |
149 |
Q |
| |
|
|||| ||| | ||||||| |||| |||| |
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| T |
38224714 |
caaagcttagagcttcttctgatattga |
38224741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 3276055 - 3276153
Alignment:
| Q |
74 |
cagtttcccacactcttagagaggagaatcaatgtgcagactatatgacaaaactttgcgcttcttatgatgttgagtttctgcttcatgattccccct |
172 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||| |||||| |||||||| | ||||||| ||||||||| |||| |||||||||| ||||| |
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| T |
3276055 |
cagtttctcacacttttagagaggagaatcaatgtgcagattatatggcaaaacttggagcttcttctgatgttgaacttcttcttcatgatttcccct |
3276153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 35061027 - 35060903
Alignment:
| Q |
1 |
cccattaagaggttccatatttatgttgttatcatataagacataaaacaaatgcttcatcaaatcaatgtaacagtttcccacactcttagagaggaga |
100 |
Q |
| |
|
|||||| | |||| |||||| || ||||| |||| |||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| || |
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|
| T |
35061027 |
cccattgaaaggtaccatatctacattgttctcatccaagacataaaacaaatgcttcaacaaaccaatgtaacagtttctcacactcttagagagagga |
35060928 |
T |
|
| Q |
101 |
atcaatgtgcagactatatgacaaa |
125 |
Q |
| |
|
| || |||||| |||| ||| |||| |
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|
| T |
35060927 |
accattgtgcaaactacatggcaaa |
35060903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 29339734 - 29339793
Alignment:
| Q |
38 |
aagacataaaacaaatgcttcatcaaatcaatgtaacagtttcccacactcttagagagg |
97 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||| || ||||| ||| |||||||||||| |
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|
| T |
29339734 |
aagacataaaacaattgctccaccaaatcaatgtgacggtttctcacgctcttagagagg |
29339793 |
T |
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