View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_2D_high_5 (Length: 400)
Name: NF1504_2D_high_5
Description: NF1504_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_2D_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 9 - 400
Target Start/End: Complemental strand, 45201178 - 45200787
Alignment:
| Q |
9 |
ctgagatgaagaggaggaaactaggtgaagagtagccaagtgtttcaacaaagctgaaagccaaaaacataatacaaaaagaagttgcatttgctgagat |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45201178 |
ctgacatgaagaggaggaaactaggtgaagagtagccaagtgtttcaacaaagctgaaagccaaaaacataatacaaaaagaagttgcatttgctgagat |
45201079 |
T |
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| Q |
109 |
aattaagaaacagttgcagatataggtatgaaagagtggcttgtaaagtgctattatcgaagagaatgaaggcggcaaagatggtttattgtgattgagt |
208 |
Q |
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| T |
45201078 |
aattaagaaacagttgcagatataggtatgaaagagtggcttgtaaagtgctattatcgaagagaatgaaggcggcaaagatggtttattgtgattgagt |
45200979 |
T |
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| Q |
209 |
ttaagtgcatgaattatggatgcttttgcaatcagaaggacagttagtgtgaaaggaagtgaaaagattgaacaagtgattgtttgagaaaccttgaggt |
308 |
Q |
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| T |
45200978 |
ttaagtgcatgaattatggatgcttttgcaatcagaaggacagttagtgtgaaaggaagtgaaaagattgaacaagtgattgtttgagaaaccttgaggt |
45200879 |
T |
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| Q |
309 |
taagaatgttgaacaatagagaataggaaggaaatcctgcagcatcaaaaagagtccttaaacggttataaatttgaggcaaaagggatgaa |
400 |
Q |
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| T |
45200878 |
taagaatgttgaacaatagagaataggaaggaaatcctgcagcatcaaaaagagtccttaaacggttataaatttgaggcaaaagggatgaa |
45200787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 381
Target Start/End: Original strand, 7772927 - 7773293
Alignment:
| Q |
9 |
ctgagatgaagaggaggaaactaggtgaagagtagccaagtgtttcaacaaagctgaaagccaaaaacataatacaaaaagaagttgcatttgctgagat |
108 |
Q |
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|||| |||||||||||||| |||||||||||||||| |||||||||||||||| |||| |||||||||| |||||||||||||||| ||| |||||||| |
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| T |
7772927 |
ctgacatgaagaggaggaacctaggtgaagagtagc-aagtgtttcaacaaagttgaaggccaaaaacaccatacaaaaagaagttgaattcgctgagat |
7773025 |
T |
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| Q |
109 |
aattaagaaacagttgcagatataggtatgaaagagtggcttgtaaagtgctattatcgaagagaatgaaggcggcaaagatggtttattgtgattgagt |
208 |
Q |
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||| | |||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| | ||||||||||||||||||||| ||| |
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| T |
7773026 |
aatccatttacagatgcagatataggtatgaaagagtggcttgtaaagtgcttttatcaaagagaatgaaggtgacaaagatggtttattgtgatttagt |
7773125 |
T |
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| Q |
209 |
ttaagtgcatgaattatggatgcttttgcaatcagaaggacagttagtgtgaaaggaagtgaaaagattgaacaagtgattgtttgagaaaccttgaggt |
308 |
Q |
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| T |
7773126 |
ttaaaagcttgaattatggatgcttttgcaat--gaa-gacattgagtgtgaaaggaagtgaaaagattgaacaagtgattgtttga-aaaacttgaggt |
7773221 |
T |
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| Q |
309 |
taagaatgttgaacaatagagaataggaaggaaatcctgcagcatcaaaaagagtccttaaacggttataaat |
381 |
Q |
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| T |
7773222 |
taaaaatg-tgaacaatatagaataggaaggatatcctgcagcatcaaagagagtccttaaacgattataaat |
7773293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 400
Target Start/End: Original strand, 13580854 - 13581036
Alignment:
| Q |
218 |
tgaattatggatgcttttgcaatcagaaggacagttagtgtgaaaggaagtgaaaagattgaacaagtgattgtttgagaaaccttgaggttaagaatgt |
317 |
Q |
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||||||||| | ||||||||||| || | | ||| || ||||||||||||| |||||||| ||||||||||||||||||| || |||||||||| |
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| T |
13580854 |
tgaattatgaaagcttttgcaatgaggaaaaaagtgagagtgaaaggaagtgtgaagattgaggaagtgattgtttgagaaactttaaggttaagaacag |
13580953 |
T |
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| Q |
318 |
tgaacaatagagaataggaaggaaatcctgcagcatcaaaaagagtccttaaacggttataaatttgaggcaaaagggatgaa |
400 |
Q |
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| T |
13580954 |
taaacaattgtgatgaagaaggaaagcctgcagcatcaaagagagtttttaggtgattgtatatttgagggaaaagggatgaa |
13581036 |
T |
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