View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_2D_high_7 (Length: 334)
Name: NF1504_2D_high_7
Description: NF1504_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_2D_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 29663967 - 29664288
Alignment:
| Q |
1 |
cgaaaaacataaaatttctttttaattccgttattaattcccatcgctaacttcattttttctacaattaaccactaatttcagattctttaatttgaac |
100 |
Q |
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| T |
29663967 |
cgaaaaacataaaattcctttttaattccgttattaattcccatcgctaacttcattttttctacaattaaccactaatttcagattctttaatttgaac |
29664066 |
T |
|
| Q |
101 |
caccaatttcagttttgcattgtacaatcttattttcatttcaattctaaataaattaaagagagcagaaattattatcattataaaataaaatgaagca |
200 |
Q |
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| T |
29664067 |
caccaatttcagttttgcattgtacaatcttgttttcatttcaattctaaataaattaaagagagcagaaattattatcattataaaataaaatgaagca |
29664166 |
T |
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| Q |
201 |
gataatattattgacttaatcatgctcgagttacacgtaatcaaggtgccactaggtgggacgaagtgactttgactgttatccaagaaagagcttttaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
29664167 |
gataatattattgacttaatcatgctcgagttacacgtaatcaaggtgccactaggtgggactaagcgactttgactgttatccaagaaagagcttttaa |
29664266 |
T |
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| Q |
301 |
tttgattagcatgatgacatct |
322 |
Q |
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||||||||| |||||||||||| |
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| T |
29664267 |
tttgattagaatgatgacatct |
29664288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 212 - 304
Target Start/End: Original strand, 29688297 - 29688388
Alignment:
| Q |
212 |
tgacttaatcatgctcgagttacacgtaatcaaggtgccactaggtgggacgaagtgactttgactgttatccaagaaagagcttttaatttg |
304 |
Q |
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| T |
29688297 |
tgacttaatcctgctcgagttaaacgtaatcaaggtgccgctaggtgggacg-attgacattgactgttatccaagaaaaagcttttaatttg |
29688388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 212 - 304
Target Start/End: Original strand, 29717137 - 29717228
Alignment:
| Q |
212 |
tgacttaatcatgctcgagttacacgtaatcaaggtgccactaggtgggacgaagtgactttgactgttatccaagaaagagcttttaatttg |
304 |
Q |
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|||||||||| ||||||||||| |||||||||||||||| |||||||||||| | |||| ||||||||||||||||||| ||||||||||||| |
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| T |
29717137 |
tgacttaatcctgctcgagttaaacgtaatcaaggtgccgctaggtgggacg-attgacattgactgttatccaagaaaaagcttttaatttg |
29717228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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