View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1504_2D_low_1 (Length: 1144)
Name: NF1504_2D_low_1
Description: NF1504_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_2D_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 790; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 790; E-Value: 0
Query Start/End: Original strand, 13 - 965
Target Start/End: Complemental strand, 27237839 - 27236886
Alignment:
| Q |
13 |
gatatgaacaaataagctatgtcagtagataagcgcagataagccaatccaaataggcaggaccaaagttgagaaaacataatctgtttttagtgttaat |
112 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| || |||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27237839 |
gataagaacaaataagctatgtcagtagataagcacaaataagccaatccgaacaggcaggactaaagttgagaaaacataatctgtttttagtgttaat |
27237740 |
T |
|
| Q |
113 |
aacaaaacacctcctagttttaatgttgcttttacatttcaaagatctgtaaaaagaaaatgtgaaaacaataagaaaatgatttcagcttttgctatac |
212 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
27237739 |
aacaaaatacctcctagttttaagtttgcttttacatttcaaagatctgtaaaaagaaaatgtgaaaacaataaaaaaatgatttcagtttttgctatac |
27237640 |
T |
|
| Q |
213 |
aaacctttgaaatcaggaaataaagtaaaaacaagatacacttttgcaatttgaagtgaaaattgaacattttctttgagcaaacatggtataacatttc |
312 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
27237639 |
aaaccattgaaatcaggaaataaagtaaaaacaagatacacttttgcaatttgaagtgaaaaatgaacattttctttgagcaaacatgccataacatttc |
27237540 |
T |
|
| Q |
313 |
attacattcagaccatgaggtccttctcaaggtcttgcagggacaatatttagcattagtagaaaaatataagcagaaagatgaaaaa-catctcacaat |
411 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
27237539 |
attacattcagaacatgaggtccttctcaaggtcttgcagggacaatattcagcattagtagaaaaatataagcagaaagatgaaaaaacatctcacaat |
27237440 |
T |
|
| Q |
412 |
tttgataacattgtctttcacattgcgtccttgccgctcaacagatttctctccaatctcgcaaattgagctacgaacagcagaaaatattatctttacc |
511 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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|
| T |
27237439 |
tttgataacattgtctttcacattgcgcccttgccgctcaacagatttctctccaatctcgcaaattgtgctacgaactgcagaaaatattatctttacc |
27237340 |
T |
|
| Q |
512 |
gcctcagaacagcaaacagtattaacatctacatcccacctgcagttccatttccacaatattactacttgttcagaaaattttgaaaaagaatttgaga |
611 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||| |||||| |
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|
| T |
27237339 |
gcctcagaacagaaaacagtattgacatctacatcccacctgcagttccatttcaacaatattactacttgtgcagaaaattttgagaaagaacttgaga |
27237240 |
T |
|
| Q |
612 |
tggcacgacattaactaagagtaggaatatacttctccatcagttgaataaggttcacttgctcttcttcagaactcccgacatcaaagaaatcatcaac |
711 |
Q |
| |
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||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27237239 |
tggcacggcattaactaatactaggaatatacttctccatcagttgaataaggttcacttgctcttcttcagaactcccgacatcaaagaaatcatcaac |
27237140 |
T |
|
| Q |
712 |
aactgttgtaagcaccccatttttcgcccaagatatgcgagcatcagaaagttcgggggaataaagagtagctgcactggagaagtaacaatatgccagt |
811 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
27237139 |
aactgttgtgagtaccccatttttcgcccaagatatgcgagcatcagaaagttcgggggaataaagagtagctgcactggagaagtaacagtatgccagt |
27237040 |
T |
|
| Q |
812 |
ttctgcctcgcaaagtctagtttgtccagtttgctttcaacaatccacctgcataggatagacaatagttatatctagatcgaagaaatgcatatttgga |
911 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || |
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|
| T |
27237039 |
ttctgcctcgcaaagtctagtttgtccagtttgctttcaacaatccacctgcatatgatggacaatagttatatctagatcgaagaaatgcatatttaga |
27236940 |
T |
|
| Q |
912 |
taaattttctggaaagcaaagcatatgccactgatccgtttggcccggtttatt |
965 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| || ||||||||||||||||| |
|
|
| T |
27236939 |
taaattttctagaaagcaaagcataggccactgctctgtttggcccggtttatt |
27236886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 1040 - 1120
Target Start/End: Complemental strand, 27236890 - 27236810
Alignment:
| Q |
1040 |
ttattgttattctctagcttaacagataacgtgttaatagaatgatagaatttgagttaaataggtaataaaatagagaaa |
1120 |
Q |
| |
|
||||||||||||| ||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27236890 |
ttattgttattctttagcttaacagataatgtactgatagaatgatagaatttgagttaaataggtaataaaatagagaaa |
27236810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 983 - 1061
Target Start/End: Original strand, 11423240 - 11423318
Alignment:
| Q |
983 |
tttaaaactgaagctaagaataagagctttagaaataaagttaaagctgtttagtaattattgttattctctagcttaa |
1061 |
Q |
| |
|
||||||| | ||||||| ||| |||||||||||||||||| ||||| ||||| |||||||||||||| | |||||||| |
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|
| T |
11423240 |
tttaaaattaaagctaaaaattagagctttagaaataaagctaaagttgtttgataattattgttattttttagcttaa |
11423318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 980 - 1060
Target Start/End: Original strand, 24097420 - 24097500
Alignment:
| Q |
980 |
tactttaaaactgaagctaagaataagagctttagaaataaagttaaagctgtttagtaattattgttattctctagctta |
1060 |
Q |
| |
|
|||||||||| | ||||||| ||||| || | ||||||||||| ||||||||||| |||||| |||||||| | ||||||| |
|
|
| T |
24097420 |
tactttaaaattaaagctaaaaataacagatatagaaataaagataaagctgtttggtaattgttgttattttttagctta |
24097500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 975 - 1039
Target Start/End: Original strand, 18180652 - 18180716
Alignment:
| Q |
975 |
aaagctactttaaaactgaagctaagaataagagctttagaaataaagttaaagctgtttagtaa |
1039 |
Q |
| |
|
||||||||||||||| | ||| ||| | ||||||||||| |||||||||||||| ||||| |||| |
|
|
| T |
18180652 |
aaagctactttaaaaataaagttaaaactaagagctttacaaataaagttaaagttgtttggtaa |
18180716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 2e-49; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 653 - 885
Target Start/End: Original strand, 22999871 - 23000103
Alignment:
| Q |
653 |
agttgaataaggttcacttgctcttcttcagaactcccgacatcaaagaaatcatcaacaactgttgtaagcaccccatttttcgcccaagatatgcgag |
752 |
Q |
| |
|
|||||||| | ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | |||| ||| ||| || ||||| |
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|
| T |
22999871 |
agttgaatgatgttcaattgctcttcttcagaactcccaacatcaaagaaatcatcaacaactgttacaagcaccgtactttttgccaaagctaagcgag |
22999970 |
T |
|
| Q |
753 |
catcagaaagttcgggggaataaagagtagctgcactggagaagtaacaatatgccagtttctgcctcgcaaagtctagtttgtccagtttgctttcaac |
852 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||| | ||||||||||||||| |||||||||| ||||| | || |||||| ||| | ||||||| |
|
|
| T |
22999971 |
aatcagatagttcgggggaaaaaagagtagctgcaccgatgaagtaacaatatgcttgtttctgccttgcaaattttaatttgtctagtctattttcaac |
23000070 |
T |
|
| Q |
853 |
aatccacctgcataggatagacaatagttatat |
885 |
Q |
| |
|
||||||||||||| |||||| || |||||||| |
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|
| T |
23000071 |
aatccacctgcatttgatagaaaacagttatat |
23000103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 407 - 564
Target Start/End: Original strand, 22999612 - 22999769
Alignment:
| Q |
407 |
acaattttgataacattgtctttcacattgcgtccttgccgctcaacagatttctctccaatctcgcaaattgagctacgaacagcagaaaatattatct |
506 |
Q |
| |
|
||||| ||||||| ||| ||| ||||||||||||||||||||| |||||||||||||||| ||| ||||||| |||||| | |||||||||||||||| |
|
|
| T |
22999612 |
acaatcttgataagattttctgtcacattgcgtccttgccgcttgacagatttctctccaaactcacaaattgtgctacgcattgcagaaaatattatct |
22999711 |
T |
|
| Q |
507 |
ttaccgcctcagaacagcaaacagtattaacatctacatcccacctgcagttccattt |
564 |
Q |
| |
|
| || ||||| || || |||||||||| ||||||||||||||| |||||||| ||||| |
|
|
| T |
22999712 |
taactgcctcggagcaacaaacagtatcaacatctacatcccaactgcagttacattt |
22999769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 961 - 1102
Target Start/End: Complemental strand, 3032040 - 3031900
Alignment:
| Q |
961 |
ttattttggcacttaaagctactttaaaactgaagctaagaataagagctttagaaataaagttaaagctgtttagtaattattgttattctctagctta |
1060 |
Q |
| |
|
|||||||| || | ||||||| ||||||| | ||||||| ||||||| |||||| |||||||||||| ||||| |||||||||||| | |||||| |
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|
| T |
3032040 |
ttattttgacattaaaagctattttaaaattaaagctaaaaataagatatttagagataaagttaaagttgtttgataattattgttaccttttagcttc |
3031941 |
T |
|
| Q |
1061 |
acagataacgtgttaatagaatgatagaatttgagttaaata |
1102 |
Q |
| |
|
| |||| || | | ||||||||||||||||||||||||||| |
|
|
| T |
3031940 |
aaagat-acttttcgatagaatgatagaatttgagttaaata |
3031900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 22999498 - 22999593
Alignment:
| Q |
141 |
cttttacatttcaaagatctgtaaaaagaaaatgtgaaaacaataagaaaatgatttcagcttttgctatacaaacctttgaaatcaggaaataaagt |
238 |
Q |
| |
|
||||| |||||||||||| || || || ||||||||||||||||| || || |||||| |||||| ||||||| ||||||||||||||||||||| |
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| T |
22999498 |
ctttttcatttcaaagatttg-aacaactaaatgtgaaaacaataa-aatatcatttcacgctttgctttacaaacatttgaaatcaggaaataaagt |
22999593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1073 - 1102
Target Start/End: Original strand, 30563451 - 30563480
Alignment:
| Q |
1073 |
ttaatagaatgatagaatttgagttaaata |
1102 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
30563451 |
ttaatagaatgatagaatttgagttaaata |
30563480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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