View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_2D_low_15 (Length: 344)
Name: NF1504_2D_low_15
Description: NF1504_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_2D_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 20 - 275
Target Start/End: Complemental strand, 38058331 - 38058076
Alignment:
| Q |
20 |
gttaaaaggtaacggaattaaaatgagtagcgaagatcaaagagcgttggtgaaggcgcaaactaaacaggaagtgcagttaatggttaaattgagagcg |
119 |
Q |
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| T |
38058331 |
gttaaaaggtaacggagttaaaatgagtagcgaagatcaaagagcgttggtgaaggcgcaaactaaacaggaagtgcagttaatggttaaattgagagcg |
38058232 |
T |
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| Q |
120 |
ccggtgaaaataaaagtggggtccgttaagacatggaagattaccgttaaagttgattgtgatttgatggtggataaattaactgccaatgctaagattg |
219 |
Q |
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| T |
38058231 |
ccggtgaaaataaaagtggggtccgttaagacatggaagattaccgttaaagttgattgtgatttgatggtggataaattaactgccaatgctaagattg |
38058132 |
T |
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| Q |
220 |
tttctaggagctgtacttttagagtggatctttggtaaataaaaaatattaaattc |
275 |
Q |
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| T |
38058131 |
tttctaggagctgtacttttagagtggatctttggtaaataaaaaatatgaaattc |
38058076 |
T |
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