View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_2D_low_18 (Length: 333)
Name: NF1504_2D_low_18
Description: NF1504_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_2D_low_18 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 49521697 - 49521383
Alignment:
| Q |
1 |
acatgacatgagggatccctttcatttttgttctaaaaataataacaatatatgttatgatagcagnnnnnnnnnnnnnnnngtaacgttgcaccatgtt |
100 |
Q |
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| T |
49521697 |
acatgacatgagggatccctttcatttttgttctaaaaatagtaacaatatatgttatgatagcagaaaaaacaaaaacaaagtaacgttgcaccatgtt |
49521598 |
T |
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| Q |
101 |
ttgactgcagagagtgaaaaactaggttcaaagagaaatattgagggggttcaacatgtgaaaaggtagatttacaggtgtaaagatttgaatccagggg |
200 |
Q |
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| T |
49521597 |
ttgactgcagagagtgaaaaaccaggttcaaagagaaatattgagggggttcaacatgtgaaaaggtatctttacatgtgtaaagatttgaatccagggg |
49521498 |
T |
|
| Q |
201 |
attcacttgaaccccctcacacaagagtggctccgacactggatgctgtgttaggatattctagaaacgtaggattgaatcgaaagggatggattaaatt |
300 |
Q |
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| T |
49521497 |
attcacttgaaccccctcacacaagagtggctccgacactggatgctgtgttaggaaattctagaaacgtaggattgaatcgaaagggatggattaaatt |
49521398 |
T |
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| Q |
301 |
ggagagggaagagat |
315 |
Q |
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| T |
49521397 |
ggagagggaagagat |
49521383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 38870420 - 38870516
Alignment:
| Q |
135 |
gaaatattgagggggttcaacatgtgaaaaggtagatttacaggtgtaaagatttgaatccaggggattcacttgaaccccctcacacaagagtggc |
231 |
Q |
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| T |
38870420 |
gaaatattgagggggttcaacatgtgaaaaagtagatttaaaggtgtaaagatttaaatccaggggattcatttgaatcccctcacataagagtggc |
38870516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 38870306 - 38870350
Alignment:
| Q |
22 |
tcatttttgttctaaaaataataacaat-atatgttatgatagca |
65 |
Q |
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| T |
38870306 |
tcatttttgttctaataataataacaataatatgtcatgatagca |
38870350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 83 - 221
Target Start/End: Original strand, 291287 - 291425
Alignment:
| Q |
83 |
gtaacgttgcaccatgttttgactgcagagagtgaaaaactaggttcaaagagaaatattgagggggttcaacatgtgaaaaggtagatttacaggtgta |
182 |
Q |
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| T |
291287 |
gtaacattgcaccacgttttgacggttcagagtgacaaaacaggttcaaagagaaatattgagggggttcaacatgtgaaaaagtagatttataggagta |
291386 |
T |
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| Q |
183 |
aagatttgaatccaggggattcacttgaaccccctcaca |
221 |
Q |
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| T |
291387 |
aagattgaaatccaggggattcacttgaaccccctcaca |
291425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 290375 - 290426
Alignment:
| Q |
12 |
gggatccctttcatttttgttctaaaaataataacaat-atatgttatgata |
62 |
Q |
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| T |
290375 |
gggatccctttcatttctgttctaataataacaacaataatatgttatgata |
290426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 3567197 - 3567261
Alignment:
| Q |
3 |
atgacatgagggatccctttcatttttgttctaaaaataataacaat-atatgttatgatagcag |
66 |
Q |
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| T |
3567197 |
atgacatgggggatccctttcatttttgttctaataatagtaacaataatatgttataatagcag |
3567261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 3567342 - 3567380
Alignment:
| Q |
203 |
tcacttgaaccccctcacacaagagtggctccgacactg |
241 |
Q |
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| T |
3567342 |
tcacttgaaccccctcacacaagagtggcttcgccactg |
3567380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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