View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_2D_low_21 (Length: 295)
Name: NF1504_2D_low_21
Description: NF1504_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_2D_low_21 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0032 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 12 - 295
Target Start/End: Complemental strand, 14411995 - 14411713
Alignment:
| Q |
12 |
gtttggtgttaattgaaatgtgagaatagagaaaacaacacaagtaatttgtattcactccaaactaggaagctacctctagtcctccctttacaaagag |
111 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
14411995 |
gtttggtgttaattgaaatgtgagaatagggaaa-caacacaagtaatttgtattcactccaaacttggaagctacctctagtactccctttacaaagag |
14411897 |
T |
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| Q |
112 |
attttgcctcaaagcccttgaggacttaatccactataacatgaactgcttacaagcactaaggtatattcttatctacctgacaatatcttagacttan |
211 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14411896 |
attttgcctcaaagcccttgaagaattaatccactataacatgaattgcttacgagaactaaggtatattcttatctacctgacaatatcttagacttat |
14411797 |
T |
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| Q |
212 |
nnnnnnnnnnnattcctaagaagttaaattagtccacctaaattggcacctataagaattaaacctgagatcttgataatgagc |
295 |
Q |
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|||| ||||||| ||||||| |||||||||||||||| ||||||||| |||| ||||| ||| || |||||| |
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| T |
14411796 |
ttttattttttattcttaagaagctaaattaatccacctaaattggcatatataagaatcaaacttgagaccttcatgatgagc |
14411713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 43 - 199
Target Start/End: Complemental strand, 14410057 - 14409901
Alignment:
| Q |
43 |
aaaacaacacaagtaatttgtattcactccaaactaggaagctacctctagtcctccctttacaaagagattttgcctcaaagcccttgaggacttaatc |
142 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14410057 |
aaaaaaacacaagtaatttgtattcactccaaacttggaagctacctctagtcctccctttatgaagagattttgcctcaaagcccttgaggacttaatc |
14409958 |
T |
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| Q |
143 |
cactataacatgaactgcttacaagcactaaggtatattcttatctacctgacaata |
199 |
Q |
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| T |
14409957 |
cactataacatgaactgcttacaagcactaaggtatattcttacctacctgacaata |
14409901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 261
Target Start/End: Complemental strand, 1094639 - 1094607
Alignment:
| Q |
229 |
aagaagttaaattagtccacctaaattggcacc |
261 |
Q |
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| T |
1094639 |
aagaagttaaattagcccacctaaattggcacc |
1094607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 40283948 - 40284006
Alignment:
| Q |
229 |
aagaagttaaattagtccacctaaattggcacctataagaattaaacctgagatcttga |
287 |
Q |
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| T |
40283948 |
aagaagttaaattagcccacctaaattggcaccaagcagaatcaaaccttagaccttga |
40284006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 256
Target Start/End: Complemental strand, 33756078 - 33756050
Alignment:
| Q |
228 |
taagaagttaaattagtccacctaaattg |
256 |
Q |
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| T |
33756078 |
taagaagttaaattagtccacctaaattg |
33756050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 261
Target Start/End: Complemental strand, 112397 - 112364
Alignment:
| Q |
228 |
taagaagttaaattagtccacctaaattggcacc |
261 |
Q |
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| T |
112397 |
taagaagctaaattagtccacctaaattggcacc |
112364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 261
Target Start/End: Complemental strand, 35826426 - 35826393
Alignment:
| Q |
228 |
taagaagttaaattagtccacctaaattggcacc |
261 |
Q |
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| T |
35826426 |
taagaagttaaattagtccacctaaattgacacc |
35826393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 261
Target Start/End: Original strand, 19087064 - 19087097
Alignment:
| Q |
228 |
taagaagttaaattagtccacctaaattggcacc |
261 |
Q |
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| T |
19087064 |
taagaagttaaattagtccacctaaattgtcacc |
19087097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 257
Target Start/End: Original strand, 28928850 - 28928879
Alignment:
| Q |
228 |
taagaagttaaattagtccacctaaattgg |
257 |
Q |
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| T |
28928850 |
taagaagttaaattagtccacctaaattgg |
28928879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 33317048 - 33317115
Alignment:
| Q |
82 |
agctacctctagtcctccctttacaaagagattttgcctcaaagcccttgaggacttaatccactataa |
150 |
Q |
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| T |
33317048 |
agctacctcccgtcctccccttaccgagagagtttgcctcaaa-ccttggaggacttaatccactataa |
33317115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 33962745 - 33962777
Alignment:
| Q |
228 |
taagaagttaaattagtccacctaaattggcac |
260 |
Q |
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| T |
33962745 |
taagaagataaattagtccacctaaattggcac |
33962777 |
T |
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