View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504_2D_low_4 (Length: 925)

Name: NF1504_2D_low_4
Description: NF1504_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504_2D_low_4
NF1504_2D_low_4
[»] chr1 (9 HSPs)
chr1 (247-513)||(38015464-38015730)
chr1 (5-121)||(38015313-38015429)
chr1 (823-924)||(50857682-50857783)
chr1 (823-924)||(13444223-13444324)
chr1 (823-891)||(13441860-13441928)
chr1 (823-867)||(31915338-31915382)
chr1 (871-924)||(8931022-8931075)
chr1 (885-925)||(42071558-42071598)
chr1 (836-867)||(43681261-43681292)
[»] chr7 (9 HSPs)
chr7 (823-925)||(859393-859495)
chr7 (823-925)||(1220670-1220772)
chr7 (823-925)||(1217397-1217499)
chr7 (823-924)||(13886425-13886526)
chr7 (823-924)||(13882923-13883022)
chr7 (831-924)||(4300314-4300407)
chr7 (823-868)||(4888947-4888992)
chr7 (831-868)||(4303215-4303252)
chr7 (823-860)||(29175573-29175610)
[»] chr2 (10 HSPs)
chr2 (831-924)||(27956399-27956492)
chr2 (831-924)||(27952563-27952656)
chr2 (831-924)||(31636093-31636186)
chr2 (822-925)||(15129167-15129270)
chr2 (823-925)||(33655376-33655478)
chr2 (823-924)||(22011182-22011283)
chr2 (853-925)||(31633884-31633956)
chr2 (822-925)||(22264185-22264287)
chr2 (823-924)||(35682004-35682104)
chr2 (871-924)||(2155765-2155818)
[»] chr8 (11 HSPs)
chr8 (826-924)||(42891909-42892007)
chr8 (823-925)||(22512285-22512387)
chr8 (841-925)||(23573351-23573435)
chr8 (841-925)||(23570355-23570439)
chr8 (848-924)||(6845112-6845188)
chr8 (865-924)||(18468508-18468567)
chr8 (836-924)||(37189630-37189717)
chr8 (836-924)||(18180926-18181013)
chr8 (871-924)||(22922089-22922142)
chr8 (823-868)||(24730821-24730866)
chr8 (848-909)||(42890182-42890243)
[»] chr3 (9 HSPs)
chr3 (823-924)||(43304196-43304297)
chr3 (823-924)||(43306910-43307011)
chr3 (823-924)||(53012778-53012877)
chr3 (830-924)||(3069113-3069207)
chr3 (823-895)||(3064006-3064078)
chr3 (823-867)||(365846-365890)
chr3 (871-925)||(45168530-45168584)
chr3 (836-867)||(2472952-2472983)
chr3 (872-911)||(19795067-19795106)
[»] chr4 (7 HSPs)
chr4 (826-925)||(22691060-22691159)
chr4 (836-925)||(22716425-22716514)
chr4 (836-925)||(22988703-22988792)
chr4 (841-925)||(6659567-6659651)
chr4 (822-925)||(24667430-24667539)
chr4 (836-925)||(13085329-13085417)
chr4 (832-925)||(19935267-19935359)
[»] chr5 (5 HSPs)
chr5 (823-925)||(21849208-21849310)
chr5 (823-925)||(21857122-21857224)
chr5 (823-925)||(21845127-21845229)
chr5 (841-925)||(40779024-40779108)
chr5 (865-925)||(19501187-19501247)
[»] chr6 (4 HSPs)
chr6 (831-911)||(29341043-29341123)
chr6 (836-925)||(11194429-11194517)
chr6 (823-925)||(18726883-18726983)
chr6 (843-908)||(18203253-18203318)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 247 - 513
Target Start/End: Original strand, 38015464 - 38015730
Alignment:
Q  247 aaatgttcacatattatatattttcctttattaatgacagaaacaaacagaagccaagcacatacctttttcttcgtaatgaggtaatcaaactcgagca 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||    
T  38015464 aaatgttcacatattatatattttcctttattaatgacagaaacaaacagaagacaagcacatacctttttcttcgtaatgaggtaatcaaactccatca 38015563  T
Q  347 atgtcaggctaaccagttcatctaactcaggtagccaagtgagcttcagttttgtggtcttcacagatccttcaagatgtaaaacaccacttaaccctgt 446  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38015564 atgtcaggctaactaattcatctaactcaggtagccaagtgagcttcagttttgtggtcttcacagatccttcaagatgtaaaacaccacttaaccctgt 38015663  T
Q  447 gacattcccatcttggtccttatatacttcctttactatggcatttcgccaatccatcaaggttact 513  Q
    ||||||||||||||||||||| | |||||||||||||| |||||||| |||||||||||||||||||    
T  38015664 gacattcccatcttggtccttctctacttcctttactacggcatttccccaatccatcaaggttact 38015730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 38015313 - 38015429
Alignment:
Q  5 tgacaaacagacagcaacatcaaataagaagtgtctttcataggacactttgcagaagaaataatgttccacgcttcgacccaatattaatgaagtgcaa 104  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  38015313 tgacaaacagacagcaagatcaaacaagaagtgtctttcataggacactttgcagaagaactaatgtttcacacttcgacccaatattaatgaagtgcaa 38015412  T
Q  105 ttgtttcatgagcacaa 121  Q
    || ||||||||||||||    
T  38015413 ttctttcatgagcacaa 38015429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 823 - 924
Target Start/End: Complemental strand, 50857783 - 50857682
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 922  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| ||||||    
T  50857783 tgatgcaggagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttgttttat 50857684  T
Q  923 tt 924  Q
    ||    
T  50857683 tt 50857682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 823 - 924
Target Start/End: Complemental strand, 13444324 - 13444223
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 922  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | || ||||||| ||||||||||||||||||||    
T  13444324 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaattttagtaattttcaagaattttctattattatttcgttttattttat 13444225  T
Q  923 tt 924  Q
    ||    
T  13444224 tt 13444223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 823 - 891
Target Start/End: Complemental strand, 13441928 - 13441860
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctat 891  Q
    |||||||  ||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  13441928 tgatgcagaagggttttgttagtaatttagtagtatttattatttagccaaatcatagtaattttctat 13441860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 823 - 867
Target Start/End: Original strand, 31915338 - 31915382
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattattt 867  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||    
T  31915338 tgatgcatgagggttttattagtaatttagtagtatttattattt 31915382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 871 - 924
Target Start/End: Original strand, 8931022 - 8931075
Alignment:
Q  871 caaatcttagtaattttctataactttctatgattatttcgttttattttattt 924  Q
    ||||||||||| |||||||| |||||||||| ||||||| ||||| ||||||||    
T  8931022 caaatcttagtgattttctagaactttctattattattttgttttgttttattt 8931075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 885 - 925
Target Start/End: Complemental strand, 42071598 - 42071558
Alignment:
Q  885 tttctataactttctatgattatttcgttttattttatttc 925  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  42071598 tttctagaactttctattattatttcgttttattttatttc 42071558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 836 - 867
Target Start/End: Original strand, 43681261 - 43681292
Alignment:
Q  836 ttttattagtaatttagtagtatttattattt 867  Q
    ||||||||||||||||||||||||||||||||    
T  43681261 ttttattagtaatttagtagtatttattattt 43681292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 3e-41; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 823 - 925
Target Start/End: Complemental strand, 859495 - 859393
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 922  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  859495 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 859396  T
Q  923 ttc 925  Q
    |||    
T  859395 ttc 859393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 823 - 925
Target Start/End: Complemental strand, 1220772 - 1220670
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 922  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  1220772 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 1220673  T
Q  923 ttc 925  Q
    |||    
T  1220672 ttc 1220670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 823 - 925
Target Start/End: Complemental strand, 1217499 - 1217397
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 922  Q
    ||||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  1217499 tgatgcaggagggttttattagtaattcagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 1217400  T
Q  923 ttc 925  Q
    |||    
T  1217399 ttc 1217397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 823 - 924
Target Start/End: Complemental strand, 13886526 - 13886425
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 922  Q
    |||||||  ||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||| ||||| |||||| |||||||||||||    
T  13886526 tgatgcagaagggttttattagtaatttagtagtatttattatttagtcaaatcttagtaattttctagaactctctattattattacgttttattttat 13886427  T
Q  923 tt 924  Q
    ||    
T  13886426 tt 13886425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 823 - 924
Target Start/End: Complemental strand, 13883022 - 13882923
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 922  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||  ||||| |||||| |||||||||||||    
T  13883022 tgatgcaggagggttttattagtaatttagtagtatttattatttagtcaaatcttagtaattttctagaac--tctattattattacgttttattttat 13882925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 831 - 924
Target Start/End: Original strand, 4300314 - 4300407
Alignment:
Q  831 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttattt 924  Q
    |||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| |||| ||||| |||||| |||||||||||||||    
T  4300314 gagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctaaaactctctattattattacgttttattttattt 4300407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 823 - 868
Target Start/End: Complemental strand, 4888992 - 4888947
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattattta 868  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||    
T  4888992 tgatgcaggagaattttattagtaatttagtagtatttattattta 4888947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 831 - 868
Target Start/End: Original strand, 4303215 - 4303252
Alignment:
Q  831 gaggattttattagtaatttagtagtatttattattta 868  Q
    |||| |||||||||||||||||||||||||||||||||    
T  4303215 gagggttttattagtaatttagtagtatttattattta 4303252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 823 - 860
Target Start/End: Original strand, 29175573 - 29175610
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtattt 860  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  29175573 tgatgcaggagggttttattagtaatttagtagtattt 29175610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 3e-38; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 831 - 924
Target Start/End: Complemental strand, 27956492 - 27956399
Alignment:
Q  831 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttattt 924  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  27956492 gagggttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctagaactttctattattatttcgttttattttattt 27956399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 831 - 924
Target Start/End: Complemental strand, 27952656 - 27952563
Alignment:
Q  831 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttattt 924  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  27952656 gagggttttattaataatttagtagtatttattatttatccaaatcttagtaattttctagaactttctattattatttcgttttattttattt 27952563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 831 - 924
Target Start/End: Original strand, 31636093 - 31636186
Alignment:
Q  831 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttattt 924  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  31636093 gagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttattt 31636186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 822 - 925
Target Start/End: Original strand, 15129167 - 15129270
Alignment:
Q  822 atgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttatttta 921  Q
    |||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| |||||||||||||||||||    
T  15129167 atgatgcaggagggttttattaataatttagtagtatttattatttaaccaaatcttagtaattttctagaacttcctattattatttcgttttatttta 15129266  T
Q  922 tttc 925  Q
    ||||    
T  15129267 tttc 15129270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 823 - 925
Target Start/End: Original strand, 33655376 - 33655478
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 922  Q
    ||||||| |||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  33655376 tgatgcaggagggttttattggtaatttagtagtatctattatttagccaaatcttagtaattttctagaactttctattattattttgttttattttat 33655475  T
Q  923 ttc 925  Q
    |||    
T  33655476 ttc 33655478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 823 - 924
Target Start/End: Original strand, 22011182 - 22011283
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 922  Q
    ||||||| |||| ||||||   |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  22011182 tgatgcaggagggttttatctttaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 22011281  T
Q  923 tt 924  Q
    ||    
T  22011282 tt 22011283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 853 - 925
Target Start/End: Original strand, 31633884 - 31633956
Alignment:
Q  853 tagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 925  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||    
T  31633884 tagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcattttattttatttc 31633956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 822 - 925
Target Start/End: Original strand, 22264185 - 22264287
Alignment:
Q  822 atgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttatttta 921  Q
    ||||||||  |||||||| ||||||||||||||||||||  | |||| ||||||||||||||||||||| |||||||||| ||||||| ||||| |||||    
T  22264185 atgatgcagaaggattttcttagtaatttagtagtattttat-tttagccaaatcttagtaattttctagaactttctattattattttgttttgtttta 22264283  T
Q  922 tttc 925  Q
    ||||    
T  22264284 tttc 22264287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 823 - 924
Target Start/End: Original strand, 35682004 - 35682104
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 922  Q
    ||||||| |||| |||| ||||||||||  ||||||||  | |||| ||||||||||||||||||||| ||||||||||  |||||||||||| ||||||    
T  35682004 tgatgcaggagggttttcttagtaattttatagtattttat-tttagccaaatcttagtaattttctagaactttctattgttatttcgttttgttttat 35682102  T
Q  923 tt 924  Q
    ||    
T  35682103 tt 35682104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 871 - 924
Target Start/End: Original strand, 2155765 - 2155818
Alignment:
Q  871 caaatcttagtaattttctataactttctatgattatttcgttttattttattt 924  Q
    ||||||||||| |||||||| |||||||||| ||||||| ||||| ||||||||    
T  2155765 caaatcttagtgattttctagaactttctattattattttgttttgttttattt 2155818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 2e-36; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 826 - 924
Target Start/End: Complemental strand, 42892007 - 42891909
Alignment:
Q  826 tgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttattt 924  Q
    |||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  42892007 tgcaggagggttttattagtaatttagtagtatttattatttaaccaaatcttagtaattttctagaactttctattattatttcgttttattttattt 42891909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 823 - 925
Target Start/End: Complemental strand, 22512387 - 22512285
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 922  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| ||| |||||||||||| |||||||    
T  22512387 tgatgcaggagagttttattagtaatttagtagtatttattatttagctaaatcttagtaattttctagaactttatattattatttcgtttcattttat 22512288  T
Q  923 ttc 925  Q
    |||    
T  22512287 ttc 22512285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 841 - 925
Target Start/End: Original strand, 23573351 - 23573435
Alignment:
Q  841 ttagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 925  Q
    ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  23573351 ttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttatttcgttttattttatttc 23573435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 841 - 925
Target Start/End: Original strand, 23570355 - 23570439
Alignment:
Q  841 ttagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 925  Q
    ||||||||||  ||||||||||||||||  |||||||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  23570355 ttagtaattttatagtatttattatttaatcaaatcttagtaattttctagaactttctatttttatttcgttttattttatttc 23570439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 848 - 924
Target Start/End: Original strand, 6845112 - 6845188
Alignment:
Q  848 tttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttattt 924  Q
    |||| ||||||||||||||||  |||||||||||||||||||| |||| ||||| |||||| ||||| |||||||||    
T  6845112 tttattagtatttattatttagtcaaatcttagtaattttctaaaactctctattattattacgtttgattttattt 6845188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 865 - 924
Target Start/End: Original strand, 18468508 - 18468567
Alignment:
Q  865 tttatccaaatcttagtaattttctataactttctatgattatttcgttttattttattt 924  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||    
T  18468508 tttaaccaaatcttagtaattttctagaactttctattattatttcgttttgttttattt 18468567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 836 - 924
Target Start/End: Original strand, 37189630 - 37189717
Alignment:
Q  836 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttattt 924  Q
    |||| ||||||||||||||||||||  | |||| |||||||||||||| ||| || |||||| ||| ||||||| ||||||||||||||    
T  37189630 ttttcttagtaatttagtagtattttat-tttagccaaatcttagtaactttttagaactttatattattattttgttttattttattt 37189717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 836 - 924
Target Start/End: Complemental strand, 18181013 - 18180926
Alignment:
Q  836 ttttattagtaatttagtagtatttattatttatc-caaatcttagtaattttctataactttctatgattatttcgttttattttattt 924  Q
    |||| ||||||||||||||||||||  |||||| | ||||||||| ||||||| || || |||||||  |||||||||||| ||||||||    
T  18181013 ttttcttagtaatttagtagtattt--tatttaactcaaatcttaataattttttagaaatttctattcttatttcgttttgttttattt 18180926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 871 - 924
Target Start/End: Complemental strand, 22922142 - 22922089
Alignment:
Q  871 caaatcttagtaattttctataactttctatgattatttcgttttattttattt 924  Q
    ||||||||||| |||||||| |||||||||| ||||||| ||||| ||||||||    
T  22922142 caaatcttagtgattttctagaactttctattattattttgttttgttttattt 22922089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 823 - 868
Target Start/End: Original strand, 24730821 - 24730866
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattattta 868  Q
    ||||||| |||| ||||||||||||||||||||||||||| |||||    
T  24730821 tgatgcaggagggttttattagtaatttagtagtatttatgattta 24730866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 848 - 909
Target Start/End: Original strand, 42890182 - 42890243
Alignment:
Q  848 tttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattattt 909  Q
    |||| |||||| ||||||||| ||||||   |||||||||||| |||||||||| |||||||    
T  42890182 tttattagtatctattatttagccaaatggaagtaattttctagaactttctattattattt 42890243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 8e-36; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 823 - 924
Target Start/End: Complemental strand, 43304297 - 43304196
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 922  Q
    ||||||| |||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  43304297 tgatgcaggagggttttattagtaatttagtagcatttattatttagccaaatcttagtaattttctataactttctattagtatttcgttttattttat 43304198  T
Q  923 tt 924  Q
    ||    
T  43304197 tt 43304196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 823 - 924
Target Start/End: Complemental strand, 43307011 - 43306910
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 922  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||||||||||||||||||    
T  43307011 tgatgcaggagggttttattagtaatttagtagtatttattatttaaccaaatcttagtaattttctagaacattctattattatttcgttttattttat 43306912  T
Q  923 tt 924  Q
    ||    
T  43306911 tt 43306910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 823 - 924
Target Start/End: Original strand, 53012778 - 53012877
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 922  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||  ||||| ||||||  ||||||||||||    
T  53012778 tgatgcaggagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaac--tctattattattatgttttattttat 53012875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 830 - 924
Target Start/End: Complemental strand, 3069207 - 3069113
Alignment:
Q  830 cgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttattt 924  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| ||||  |||| |||||| |||||||||||||||    
T  3069207 cgagggttttattagtaatttagtagtatttattatttagccaaatctttgtaattctctagaactcactattattattacgttttattttattt 3069113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 823 - 895
Target Start/End: Complemental strand, 3064078 - 3064006
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataact 895  Q
    ||||||| |||| |||| |||||||||||||||||||||||||||| |||||||||||||||| |||| ||||    
T  3064078 tgatgcaggagggttttgttagtaatttagtagtatttattatttagccaaatcttagtaattctctagaact 3064006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 823 - 867
Target Start/End: Complemental strand, 365890 - 365846
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattattt 867  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  365890 tgatgcaggaggattttattagtaatttagtagtatttattattt 365846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 871 - 925
Target Start/End: Complemental strand, 45168584 - 45168530
Alignment:
Q  871 caaatcttagtaattttctataactttctatgattatttcgttttattttatttc 925  Q
    ||||| |||||||||||||| ||| |||||| |||||||||||||||||||||||    
T  45168584 caaattttagtaattttctaaaaccttctattattatttcgttttattttatttc 45168530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 836 - 867
Target Start/End: Complemental strand, 2472983 - 2472952
Alignment:
Q  836 ttttattagtaatttagtagtatttattattt 867  Q
    ||||||||||||||||||||||||||||||||    
T  2472983 ttttattagtaatttagtagtatttattattt 2472952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 872 - 911
Target Start/End: Original strand, 19795067 - 19795106
Alignment:
Q  872 aaatcttagtaattttctataactttctatgattatttcg 911  Q
    ||||||||||||||||||| |||||||||| |||||||||    
T  19795067 aaatcttagtaattttctagaactttctattattatttcg 19795106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 3e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 826 - 925
Target Start/End: Original strand, 22691060 - 22691159
Alignment:
Q  826 tgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 925  Q
    |||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  22691060 tgcaggagggttttattaataatttagtagtatttattatttagccaaatcttagtaattttctagaactttgtattattatttcgttttattttatttc 22691159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 836 - 925
Target Start/End: Original strand, 22716425 - 22716514
Alignment:
Q  836 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 925  Q
    |||||||||||||||| |||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||    
T  22716425 ttttattagtaatttaatagtatttattatttagccaaatcttaataattttctagaactttctattattatttctttttattttatttc 22716514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 836 - 925
Target Start/End: Complemental strand, 22988792 - 22988703
Alignment:
Q  836 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 925  Q
    |||||||||||||||| |||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||    
T  22988792 ttttattagtaatttaatagtatttattatttagccaaatcttaataattttctagaactttctattattatttctttttattttatttc 22988703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 841 - 925
Target Start/End: Complemental strand, 6659651 - 6659567
Alignment:
Q  841 ttagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 925  Q
    ||||||||||   ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  6659651 ttagtaattttacagtatttattatttagccaaatcttagtaattttctagaactttctattattattttgttttattttatttc 6659567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 822 - 925
Target Start/End: Original strand, 24667430 - 24667539
Alignment:
Q  822 atgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttcta-taa-----ctttctatgattatttcgtttt 915  Q
    |||||||| ||||  ||||||| ||||||||||||| |||||||||| ||||||| |||||||||| || |||     |||||||| |||||||| ||||    
T  24667430 atgatgcaggagggctttattattaatttagtagtagttattatttagccaaatcgtagtaattttttagtaattcatctttctattattatttcatttt 24667529  T
Q  916 attttatttc 925  Q
    ||||||||||    
T  24667530 attttatttc 24667539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 836 - 925
Target Start/End: Complemental strand, 13085417 - 13085329
Alignment:
Q  836 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 925  Q
    |||| ||||||||||  ||||||||  | |||| ||| ||||||||||| ||||| |||||||||| ||||||||||||| |||||||||    
T  13085417 tttttttagtaattttatagtattttat-tttagccacatcttagtaatattctagaactttctattattatttcgttttgttttatttc 13085329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 832 - 925
Target Start/End: Original strand, 19935267 - 19935359
Alignment:
Q  832 aggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 925  Q
    |||||||| ||||||||||||||||||||  | ||||  ||||||||| | |||||  | |||||||||| ||||||||||||| |||||||||    
T  19935267 aggattttcttagtaatttagtagtattttat-tttagtcaaatcttaatcatttttcagaactttctattattatttcgttttgttttatttc 19935359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 3e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 823 - 925
Target Start/End: Complemental strand, 21849310 - 21849208
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 922  Q
    |||||||||||| |||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||| ||||||||||||    
T  21849310 tgatgcacgagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttattttgttttattttat 21849211  T
Q  923 ttc 925  Q
    |||    
T  21849210 ttc 21849208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 823 - 925
Target Start/End: Complemental strand, 21857224 - 21857122
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 922  Q
    |||||||||||| |||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||| ||||||||||||    
T  21857224 tgatgcacgagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttattttgttttattttat 21857125  T
Q  923 ttc 925  Q
    |||    
T  21857124 ttc 21857122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 823 - 925
Target Start/End: Complemental strand, 21845229 - 21845127
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 922  Q
    ||||||| |||| |||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||| ||||||||||||    
T  21845229 tgatgcaagagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttattttgttttattttat 21845130  T
Q  923 ttc 925  Q
    |||    
T  21845129 ttc 21845127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 841 - 925
Target Start/End: Complemental strand, 40779108 - 40779024
Alignment:
Q  841 ttagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 925  Q
    ||||||||||   ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  40779108 ttagtaattttacagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttatttc 40779024  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 865 - 925
Target Start/End: Complemental strand, 19501247 - 19501187
Alignment:
Q  865 tttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 925  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||| ||||| |||||||||    
T  19501247 tttacccaaatcttagtaattttctaaaactttctattattattttgttttgttttatttc 19501187  T

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Target: chr6 (Bit Score: 61; Significance: 1e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 831 - 911
Target Start/End: Complemental strand, 29341123 - 29341043
Alignment:
Q  831 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcg 911  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| |||||||||    
T  29341123 gagggttttattagtaatttagtagtatttattttttagccaaatcttagtaattttctaaaactttctattattatttcg 29341043  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 836 - 925
Target Start/End: Original strand, 11194429 - 11194517
Alignment:
Q  836 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 925  Q
    |||| ||||||||||||||||||||  | |||| ||||||||||||||||||||| |||||||||  ||||||| ||||| |||||||||    
T  11194429 ttttcttagtaatttagtagtattttat-tttagccaaatcttagtaattttctagaactttctagtattattttgttttgttttatttc 11194517  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 823 - 925
Target Start/End: Original strand, 18726883 - 18726983
Alignment:
Q  823 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 922  Q
    ||||||| |||| |||| ||||||||||  |||| |||  | |||| |||||||||||| |||||||| |||||||||| ||||||||||||| ||||||    
T  18726883 tgatgcaggagggtttttttagtaattttatagttttttat-tttagccaaatcttagtcattttctagaactttctattattatttcgtttt-ttttat 18726980  T
Q  923 ttc 925  Q
    |||    
T  18726981 ttc 18726983  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 843 - 908
Target Start/End: Original strand, 18203253 - 18203318
Alignment:
Q  843 agtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatt 908  Q
    ||||||||  ||||||||||||||||  |||||||||||||||||||| |||| ||||| ||||||    
T  18203253 agtaattttatagtatttattatttagtcaaatcttagtaattttctagaactctctattattatt 18203318  T

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