View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_2D_low_6 (Length: 510)
Name: NF1504_2D_low_6
Description: NF1504_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_2D_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Complemental strand, 19214581 - 19214108
Alignment:
| Q |
18 |
gaaaattgacaatggctgaaacggaggagcttcccaaaactatcgtacgtcgtgtggtgaaggagaagctttccacttgctccgaagacggcgacattgc |
117 |
Q |
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| T |
19214581 |
gaaaattgacaatggctgaaacggaggagcttcccaaaactatcgtacgtcgtgtggtgaaggagaagctttccacttgctccgacgacggcgacattgc |
19214482 |
T |
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| Q |
118 |
cgttcacaaagacgctcttcttgcattctccgaaagtgccagaatcttcatccactacgtttctgctacgtaagtgcttgccttctctctgaattcctaa |
217 |
Q |
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| T |
19214481 |
cgttcacaaagacgctcttcttgcattctccgaaagtgccagaatcttcatccactacctttcagctacgtaagtgcttgccttctctctgaattcctaa |
19214382 |
T |
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| Q |
218 |
tttgcgcacaaataagtaaaaaccctaatttcataaatttgatgtctgaaattccctttttggaggtaattggggaaattttgtaatgggttttggctat |
317 |
Q |
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| T |
19214381 |
tttgcgcacaaataagtaaaaaccctaatttcataaatttgatgtctgaaattccctttttggaggtaattggggaaattctgtaatgggttttggctat |
19214282 |
T |
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| Q |
318 |
tgattcatgaatggttttaaaaattgaaactttggttgtaaggaaggagatgaaaattatggtttatattttgcaggcaattgaaaaatttttacaatgg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
19214281 |
tgattcatgaatggttttaaaaattgaaactttggttgtaaggaaggagatgaaaattatggtttatattttgcaggcaattggaaaaaatttacaatgg |
19214182 |
T |
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| Q |
418 |
tttttggtattgattaatgggtgattttaaaaatgggaactttgtaagaaagaggataaaaattagggtttgta |
491 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19214181 |
tttttgggattgattcatgggtgattttaaaaatgggaactttgtaagaaagaggataaaaattagggtttgta |
19214108 |
T |
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