View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_2D_low_7 (Length: 424)
Name: NF1504_2D_low_7
Description: NF1504_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_2D_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 31560096 - 31559705
Alignment:
| Q |
18 |
ttatttttgccaaattgacgccaatcatgtcgatgtctttggcaacacaattaggaggacaataaacttctacttcagggactgacatcggaaatcgttg |
117 |
Q |
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| T |
31560096 |
ttatttttgccaaattgacgccaatcatgtcgatgtctttggcaacacaattaggaggacaataaacttctacttcagggactgacatcggtaatcgttg |
31559997 |
T |
|
| Q |
118 |
aagtttaagacgatttttcaaataccgatctacgattcaccatataacttaccttggacgaccttcgtgattgaaaactaatattccattgaaatagtca |
217 |
Q |
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| T |
31559996 |
aagtttaagacgatttttcaaataccgatctatgattcaccatagaacttaccttggacgaccttcgtgattgaaagctaatattccattgaaatagtca |
31559897 |
T |
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| Q |
218 |
atccaaaagagaagcctggaaaagggttataatttagcacataaatttgtatttagaaataattccttatttccataattctggaaaagagaatagacaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31559896 |
atccaaaagagaagcctggaaaagggttataatttagcacatatatttgtatttagaaataattccttatttccataattctggaaaagagaatagacaa |
31559797 |
T |
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| Q |
318 |
aaaccatgtattcattaaagatgatgaagtaagatacttcaaattttcaatcatacacataataaagagaaaaagaggtaaagaaaatgaca |
409 |
Q |
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| T |
31559796 |
aaaccaagtattcattaaagatgatgaagtaagatacttcaaattttcaatcatacacataataaagagaaaaataggtaaagaaaatgaca |
31559705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 152 - 368
Target Start/End: Complemental strand, 31556945 - 31556730
Alignment:
| Q |
152 |
attcaccatataacttaccttggacgaccttcgtgattgaaaactaatattccattgaaatagtcaatccaaaagagaagcctggaaaagggttataatt |
251 |
Q |
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| T |
31556945 |
attcaccatagaacttacattggacgaccttcgtgattgaaaactaatattccattgcaatagccaatccaaaagagaagtctggaaa-ggattataatt |
31556847 |
T |
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| Q |
252 |
tagcacataaatttgtatttagaaataattccttatttccataattctggaaaagagaatagacaaaaaccatgtattcattaaagatgatgaagtaaga |
351 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
31556846 |
tagcacatgtatttgtatttagtaataattccttatttccatcatgctgaaaaagagaatagacaaaaaccatgtattcattaaagatgctgaaataaga |
31556747 |
T |
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| Q |
352 |
tacttcaaattttcaat |
368 |
Q |
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| T |
31556746 |
tacttcaaattttcaat |
31556730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 65 - 265
Target Start/End: Original strand, 31876798 - 31876998
Alignment:
| Q |
65 |
caattaggaggacaataaacttctacttcagggactgacatcggaaatcgttgaagtttaagacgatttttcaaataccgatctacgattcaccatataa |
164 |
Q |
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||||||| |||||| | | ||||||||| |||||| ||| |||| ||||||||||||||||| |||||||||| ||| |||||||| |||| ||| || |
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| T |
31876798 |
caattagaaggacagttagcttctacttgagggaccgacgtcggttatcgttgaagtttaagaagatttttcaagtactgatctacggttcatcattgaa |
31876897 |
T |
|
| Q |
165 |
cttaccttggacgaccttcgtgattgaaaactaatattccattgaaatagtcaatccaaaagagaagcctggaaaagggttataatttagcacataaatt |
264 |
Q |
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||| ||||||| ||||||| ||||||||| ||||| |||||||||||| |||||||||||| ||||| ||| | |||||||||||||||||||||| ||| |
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| T |
31876898 |
ctttccttggatgaccttcatgattgaaagctaatgttccattgaaattgtcaatccaaaaaagaagtctgaagaagggttataatttagcacatatatt |
31876997 |
T |
|
| Q |
265 |
t |
265 |
Q |
| |
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| |
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| T |
31876998 |
t |
31876998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 31557251 - 31557118
Alignment:
| Q |
21 |
tttttgccaaattgacgccaatcatgtcgatgtctttggcaacacaattaggaggacaataaacttctacttcagggactgacatcggaaatcgttgaag |
120 |
Q |
| |
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||||||||||||||| ||||||||||| |||||||||| | |||||||||| |||| |||||| ||||||| |||| || |||| |||| |||||| |
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| T |
31557251 |
tttttgccaaattgaaaccaatcatgtcaatgtctttggtataacaattaggacgacagtaaact--tacttcacggaccaacgtcggtaatcattgaag |
31557154 |
T |
|
| Q |
121 |
tttaagacgatttttcaaataccgatctacgattca |
156 |
Q |
| |
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|||||||||| ||||||| ||||||| ||| ||||| |
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| T |
31557153 |
tttaagacgaattttcaagtaccgatgtacaattca |
31557118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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