View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_2D_low_9 (Length: 405)
Name: NF1504_2D_low_9
Description: NF1504_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_2D_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 163 - 388
Target Start/End: Original strand, 5475016 - 5475238
Alignment:
| Q |
163 |
agagttgcatattaaactaacaagagcacaacttcttctatcatatcatgaactctgattagcaacatattcacaagcaattgaccacaacttggccaac |
262 |
Q |
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| T |
5475016 |
agagttgcatattaaactaacaacaacacaacttcccctatcatatcatgaactctgattagcaacatattcacaagcaattgaccacaacttggccaac |
5475115 |
T |
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| Q |
263 |
aaagctaaatcgacaacattccatgaaatctaaatcgtgtttaatagagtcctctagtgatactactattaaggggtttcacgatgataacttccatnnn |
362 |
Q |
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| T |
5475116 |
aaagctaaatcgacaacattctatgaaatctaaatcatgtttaatatagtcctctagtga---tactattaaggaatttcacgatgataactttcataaa |
5475212 |
T |
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| Q |
363 |
nnnngtttgttaatgacgggtgatgt |
388 |
Q |
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| T |
5475213 |
taaggtttgttaatgacgagtgatgt |
5475238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 5474791 - 5474868
Alignment:
| Q |
1 |
gtcttatcaacaacacaaaccaaaataaaagttcatgataaaaaagatggcattgttcattaatcaatttttaataaa |
78 |
Q |
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| T |
5474791 |
gtcttaccaacaacacaaaccaaaataaaagttcatgataaaaaagatggcattgttcattaatcaatttttaataaa |
5474868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 5474947 - 5475000
Alignment:
| Q |
160 |
acaagagttgcatattaaactaacaagagcacaacttcttctatcatatcatgaact |
216 |
Q |
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| T |
5474947 |
acaagagttgcatattaaactaacaagagcacaa---cttctatcatatcatgaact |
5475000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 19064921 - 19064966
Alignment:
| Q |
163 |
agagttgcatattaaactaacaagagcacaacttcttctatcatat |
208 |
Q |
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| T |
19064921 |
agagtagcatattgaactaacaagagcacaacttcacctatcatat |
19064966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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