View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15050_high_1 (Length: 326)

Name: NF15050_high_1
Description: NF15050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15050_high_1
NF15050_high_1
[»] chr3 (13 HSPs)
chr3 (44-261)||(34897722-34897940)
chr3 (239-326)||(1995486-1995573)
chr3 (250-324)||(52859272-52859346)
chr3 (1-50)||(34899926-34899975)
chr3 (257-324)||(44637986-44638052)
chr3 (254-323)||(30235416-30235484)
chr3 (291-324)||(33632866-33632899)
chr3 (254-326)||(10474400-10474471)
chr3 (256-324)||(29586380-29586447)
chr3 (256-323)||(24754702-24754769)
chr3 (256-323)||(24763699-24763766)
chr3 (256-321)||(51982549-51982613)
chr3 (261-325)||(47750274-47750337)
[»] chr6 (7 HSPs)
chr6 (248-324)||(2800566-2800642)
chr6 (248-324)||(7215807-7215883)
chr6 (256-324)||(17828532-17828599)
chr6 (249-291)||(9952993-9953035)
chr6 (247-323)||(4804493-4804569)
chr6 (258-316)||(23936305-23936365)
chr6 (257-313)||(29229149-29229204)
[»] chr1 (11 HSPs)
chr1 (248-324)||(39426254-39426330)
chr1 (250-324)||(35534741-35534813)
chr1 (247-320)||(32887735-32887807)
chr1 (252-324)||(26860010-26860081)
chr1 (256-322)||(26372298-26372362)
chr1 (256-323)||(50294026-50294093)
chr1 (257-311)||(49384627-49384680)
chr1 (249-313)||(1228496-1228560)
chr1 (247-323)||(12380831-12380907)
chr1 (247-323)||(12384898-12384974)
chr1 (249-313)||(18976260-18976324)
[»] chr8 (6 HSPs)
chr8 (250-324)||(42761757-42761831)
chr8 (247-326)||(21360318-21360400)
chr8 (254-324)||(42338008-42338077)
chr8 (245-311)||(20169125-20169190)
chr8 (291-324)||(17520426-17520459)
chr8 (246-323)||(37966397-37966473)
[»] chr2 (14 HSPs)
chr2 (249-324)||(4446852-4446927)
chr2 (249-324)||(30217517-30217592)
chr2 (250-324)||(30709154-30709228)
chr2 (248-318)||(30721564-30721632)
chr2 (247-324)||(19908824-19908899)
chr2 (249-323)||(2063399-2063472)
chr2 (248-324)||(31618724-31618798)
chr2 (256-322)||(22061433-22061498)
chr2 (273-321)||(36929763-36929810)
chr2 (291-326)||(35315286-35315321)
chr2 (252-326)||(30857638-30857711)
chr2 (290-324)||(34512022-34512056)
chr2 (250-299)||(6946335-6946384)
chr2 (291-323)||(19905926-19905958)
[»] chr7 (8 HSPs)
chr7 (249-326)||(47270592-47270668)
chr7 (287-324)||(29844335-29844372)
chr7 (256-324)||(4888511-4888579)
chr7 (256-324)||(5463867-5463934)
chr7 (256-323)||(44648009-44648076)
chr7 (245-311)||(44390835-44390900)
chr7 (248-313)||(33450562-33450627)
chr7 (278-322)||(18064601-18064643)
[»] chr4 (13 HSPs)
chr4 (248-319)||(15178628-15178699)
chr4 (251-320)||(36532673-36532741)
chr4 (254-319)||(33841766-33841830)
chr4 (257-313)||(5815267-5815322)
chr4 (256-323)||(23610687-23610754)
chr4 (253-322)||(42844148-42844216)
chr4 (252-324)||(1871321-1871392)
chr4 (256-323)||(19901881-19901948)
chr4 (256-323)||(39862562-39862629)
chr4 (249-321)||(56453777-56453848)
chr4 (290-326)||(5817977-5818013)
chr4 (291-323)||(23474156-23474188)
chr4 (247-323)||(56558324-56558400)
[»] chr5 (7 HSPs)
chr5 (256-324)||(29341039-29341106)
chr5 (254-320)||(9460597-9460662)
chr5 (256-324)||(43309152-43309220)
chr5 (256-323)||(11775838-11775905)
chr5 (249-283)||(21213953-21213987)
chr5 (291-324)||(31653079-31653112)
chr5 (292-320)||(2984389-2984417)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 44 - 261
Target Start/End: Original strand, 34897722 - 34897940
Alignment:
Q  44 atataaaaaccctctctccatttcttaaatgttgtagaaatggacaaatcagctgatnnnnnnnn-tagaagtggacatcttcaataccgttttgttcgg 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||    
T  34897722 atataaaaaccctctctccatttcttaaatgttgtagaaatggacaaatcagctgataaaaaaaaatagaagtggacatcttcaataccgttttgttcgg 34897821  T
Q  143 tagaactataattttgatacaaatagaaaatatcattgtaaaaactgttttgtttttggagaatttgttggaatccaagtcaacatgtaatagaggtggg 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  34897822 tagaactataattttgatacaaatagaaaatatcattgtaaaaactgttttgtttttggagaatttgtcggaatccaagtcaacatgtaattgaggtggg 34897921  T
Q  243 tgagaggggttaggatcct 261  Q
    |||||||||||||||||||    
T  34897922 tgagaggggttaggatcct 34897940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 239 - 326
Target Start/End: Complemental strand, 1995573 - 1995486
Alignment:
Q  239 tgggtgagaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataat 326  Q
    ||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||| | ||||||||||||    
T  1995573 tgggtgacatgggttaggatcctcttcattttatcaaataaatggaagtacacaatttgaagagagatagacatagaaaatagataat 1995486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 52859346 - 52859272
Alignment:
Q  250 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    ||||| |||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||    
T  52859346 ggttatgatcctctccatttgataaaataaatgaaaatacacaatttagagagagatagacacataaaatagata 52859272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 34899975 - 34899926
Alignment:
Q  1 atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaa 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899975 atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaa 34899926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 44638052 - 44637986
Alignment:
Q  257 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    |||||| |||||||| |||||||||||| |||  |||||| |||||||||| ||||||||||||||||    
T  44638052 atcctcatcatttgacaaaataaatgga-gtatgcaattttgagagagataaacacataaaatagata 44637986  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 30235416 - 30235484
Alignment:
Q  254 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 323  Q
    |||||| |||||||||| |||||||||||| ||||  ||||||| ||||||||||||| | |||||||||    
T  30235416 aggatcatcttcatttgttaaaataaatgg-agtatgcaatttgaagagagatagacataaaaaatagat 30235484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 33632899 - 33632866
Alignment:
Q  291 caatttggagagagatagacacataaaatagata 324  Q
    ||||||||||||||||||||||||||||||||||    
T  33632899 caatttggagagagatagacacataaaatagata 33632866  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 326
Target Start/End: Original strand, 10474400 - 10474471
Alignment:
Q  254 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataat 326  Q
    ||||||||||  |||||| | |||||||||| |||  |||||| |||||| ||||||||||||||||||||||    
T  10474400 aggatcctctctatttgacataataaatgga-gtatgcaattttgagagatatagacacataaaatagataat 10474471  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 29586447 - 29586380
Alignment:
Q  256 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    ||||||||||||||   | |||||||||| |||  || |||||||||||||||||||||||||||||||    
T  29586447 gatcctcttcatttagcataataaatgga-gtatgcagtttggagagagatagacacataaaatagata 29586380  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 24754769 - 24754702
Alignment:
Q  256 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 323  Q
    |||||||| ||||||  ||||||||||||  |  |||| ||||||||||||||||||| |||||||||    
T  24754769 gatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagat 24754702  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 24763766 - 24763699
Alignment:
Q  256 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 323  Q
    |||||||| ||||||  ||||||||||||  |  |||| ||||||||||||||||||| |||||||||    
T  24763766 gatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagat 24763699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 51982549 - 51982613
Alignment:
Q  256 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatag 321  Q
    |||||||| |||||   |||||||||||||| |  ||||||||||||||||||| |||||||||||    
T  51982549 gatcctctccatttataaaaataaatggaag-atgcaatttggagagagatagatacataaaatag 51982613  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 47750274 - 47750337
Alignment:
Q  261 tcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataa 325  Q
    ||||||||||| |||||||||| | ||| |||||||| ||||| ||| ||||| |||||||||||    
T  47750274 tcttcatttgacaaaataaatg-aggtatacaatttgaagagacataaacacaaaaaatagataa 47750337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 248 - 324
Target Start/End: Original strand, 2800566 - 2800642
Alignment:
Q  248 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  2800566 ggggttaggatcctctccatttgataaaattaatggaaatacacaatttggagagagatagacacataaaatagata 2800642  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 248 - 324
Target Start/End: Original strand, 7215807 - 7215883
Alignment:
Q  248 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7215807 ggggttagtatcctctccatttgataaaataaatggaagtgcacaatttggagagagatagacacataaaatagata 7215883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 17828532 - 17828599
Alignment:
Q  256 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    |||||||| |||||| || ||||| |||| |||  ||||||||||||||||||||||||||||||||||    
T  17828532 gatcctctacatttggtataataattgga-gtatgcaatttggagagagatagacacataaaatagata 17828599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 9952993 - 9953035
Alignment:
Q  249 gggttaggatcctcttcatttgataaaataaatggaagtacac 291  Q
    |||||| |||||||| |||||||||||||||||||||||||||    
T  9952993 gggttaagatcctctccatttgataaaataaatggaagtacac 9953035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 4804569 - 4804493
Alignment:
Q  247 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 323  Q
    |||||| | |||||||| ||||||  ||||||||||||  |  |||| ||||||||||||||||||| |||||||||    
T  4804569 aggggtgaagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacaaaaaatagat 4804493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 316
Target Start/End: Complemental strand, 23936365 - 23936305
Alignment:
Q  258 tcctcttcatttgataaaataaatggaagtacacaatttg--gagagagatagacacataa 316  Q
    |||||| ||||||||||| | |||| |||||||||||| |  |||||||||||||||||||    
T  23936365 tcctctccatttgataaattgaatgaaagtacacaattcggagagagagatagacacataa 23936305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 313
Target Start/End: Complemental strand, 29229204 - 29229149
Alignment:
Q  257 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacaca 313  Q
    ||||||| |||||| || |||||||||| |||  |||||||||||||||||||||||    
T  29229204 atcctctccatttggtataataaatgga-gtatgcaatttggagagagatagacaca 29229149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 248 - 324
Target Start/End: Complemental strand, 39426330 - 39426254
Alignment:
Q  248 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39426330 ggggttagtatcatctccatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 39426254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 35534741 - 35534813
Alignment:
Q  250 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  35534741 ggttagtatcctctccatttgataaaataaatggaagtacacaattt--agagagatagacacataaaatagata 35534813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 247 - 320
Target Start/End: Original strand, 32887735 - 32887807
Alignment:
Q  247 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaata 320  Q
    |||| |||||||||||||||||||||||||||||||| |||||||| ||| |||| ||||||||||||||||||    
T  32887735 agggattaggatcctcttcatttgataaaataaatgg-agtacacagtttagagaaagatagacacataaaata 32887807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 324
Target Start/End: Original strand, 26860010 - 26860081
Alignment:
Q  252 ttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    |||||||| |||  ||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  26860010 ttaggatcatctctatttgataaaataaatgga-gtacataatttgaagagagatagacacataaaatagata 26860081  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 322
Target Start/End: Complemental strand, 26372362 - 26372298
Alignment:
Q  256 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaataga 322  Q
    ||||||||  ||||||||||||||||||||||| | |||||  |||||||||||||| |||||||||    
T  26372362 gatcctctcaatttgataaaataaatggaagtagataattt--agagagatagacacgtaaaataga 26372298  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 323
Target Start/End: Original strand, 50294026 - 50294093
Alignment:
Q  256 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 323  Q
    |||||||||||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  50294026 gatcctcttcatttggcaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagat 50294093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 49384627 - 49384680
Alignment:
Q  257 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagaca 311  Q
    ||||||| |||||| |||||||||||||| || ||||||| ||||||||||||||    
T  49384627 atcctctccatttgttaaaataaatggaa-tatacaatttagagagagatagaca 49384680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 1228496 - 1228560
Alignment:
Q  249 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacaca 313  Q
    |||||| ||||||||||||||  |||||||||||||  |   ||||||||||||||| |||||||    
T  1228496 gggttaagatcctcttcatttactaaaataaatggagttttgcaatttggagagagacagacaca 1228560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 12380831 - 12380907
Alignment:
Q  247 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 323  Q
    |||||| | |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  12380831 aggggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 12380907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 12384898 - 12384974
Alignment:
Q  247 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 323  Q
    |||||| | |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  12384898 aggggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 12384974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 18976260 - 18976324
Alignment:
Q  249 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacaca 313  Q
    |||||| |||||||| |||||| |||||||||| ||  |   |||||||||||||||||||||||    
T  18976260 gggttaagatcctctccatttgctaaaataaattgagttttgcaatttggagagagatagacaca 18976324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 42761831 - 42761757
Alignment:
Q  250 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    ||||||||||||||||| || ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  42761831 ggttaggatcctcttcacttaataaaataaatggaagtacgcaatttgaagagagatagacacataaaatagata 42761757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 326
Target Start/End: Complemental strand, 21360400 - 21360318
Alignment:
Q  247 aggggttaggatcctcttcatttgataaaataaatggaag----tacacaatttggagagagatagacacataaaatagataat 326  Q
    ||||||||||||||||| ||||||||||||||||| ||||    |||| |||||||||||||||| |||||||| |||||||||    
T  21360400 aggggttaggatcctctccatttgataaaataaat-gaagtacatacataatttggagagagataaacacataatatagataat 21360318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 324
Target Start/End: Original strand, 42338008 - 42338077
Alignment:
Q  254 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    ||||||||||||||||||||||||||||  ||||| | |||||||||||| ||| |||  |||||||||||    
T  42338008 aggatcctcttcatttgataaaataaat-taagtatataatttggagagatatatacatgtaaaatagata 42338077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 20169190 - 20169125
Alignment:
Q  245 agaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagaca 311  Q
    |||||||||| |||||||| |||||   |||||||||||||| |  |||||||||||||||||||||    
T  20169190 agaggggttaagatcctctccatttataaaaataaatggaag-atgcaatttggagagagatagaca 20169125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 17520459 - 17520426
Alignment:
Q  291 caatttggagagagatagacacataaaatagata 324  Q
    ||||||||||||| ||||||||||||||||||||    
T  17520459 caatttggagagatatagacacataaaatagata 17520426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 37966397 - 37966473
Alignment:
Q  246 gaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 323  Q
    ||||||||| |||||||| ||||||  ||||||||||||| |   ||||||| ||||||||| ||||| |||||||||    
T  37966397 gaggggttaagatcctctccatttggcaaaataaatggaa-tttgcaatttgaagagagataaacacaaaaaatagat 37966473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 4446852 - 4446927
Alignment:
Q  249 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    ||||||| ||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  4446852 gggttagtatcctctccatttgataaaataaatggaagtgtacaatttgaagagagatagacacataaaatagata 4446927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 249 - 324
Target Start/End: Complemental strand, 30217592 - 30217517
Alignment:
Q  249 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    |||||||||||||||  ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||    
T  30217592 gggttaggatcctctctatttgataaaataaatggaagcacacaatttagagtgagatagacacataaaatagata 30217517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 30709228 - 30709154
Alignment:
Q  250 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    |||||||||||||| ||| | ||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  30709228 ggttaggatcctctccatcttataaaatcaatgaaagtacacaatttggagagagatagacacataaaatagata 30709154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 30721564 - 30721632
Alignment:
Q  248 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaa 318  Q
    ||||||| ||||| || ||||||||||||||||| |||||||||||||||  |||||||||||||||||||    
T  30721564 ggggttaagatccgctccatttgataaaataaatagaagtacacaatttg--gagagatagacacataaaa 30721632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 247 - 324
Target Start/End: Complemental strand, 19908899 - 19908824
Alignment:
Q  247 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    |||||| | |||||||||||||||||| ||||||||| ||||  |||||||||| |||||||||||||||||||||||    
T  19908899 aggggtaaagatcctcttcatttgatataataaatgg-agtatgcaatttggag-gagatagacacataaaatagata 19908824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 323
Target Start/End: Complemental strand, 2063472 - 2063399
Alignment:
Q  249 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 323  Q
    |||||| |||||||||||||||| ||||||||| || ||   ||||||||||||||||||||||| |||||||||    
T  2063472 gggttaagatcctcttcatttgacaaaataaataga-gtttgcaatttggagagagatagacacaaaaaatagat 2063399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 324
Target Start/End: Original strand, 31618724 - 31618798
Alignment:
Q  248 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    |||||||||||||||| |||||||| ||| |||||| |||| |||||||||||| ||||||| | ||||||||||||    
T  31618724 ggggttaggatcctctccatttgat-aaagaaatgg-agtatacaatttggagaaagatagatatataaaatagata 31618798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 322
Target Start/End: Original strand, 22061433 - 22061498
Alignment:
Q  256 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaataga 322  Q
    ||||||||  |||||| |||||||||| |||||  ||||||| ||||||||||||||||||||||||    
T  22061433 gatcctctcaatttgacaaaataaatg-aagtatgcaatttgaagagagatagacacataaaataga 22061498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 36929810 - 36929763
Alignment:
Q  273 aaaataaatggaagtacacaatttggagagagatagacacataaaatag 321  Q
    |||||||||||| |||  |||||||||||||||||||||||||||||||    
T  36929810 aaaataaatgga-gtatgcaatttggagagagatagacacataaaatag 36929763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 291 - 326
Target Start/End: Original strand, 35315286 - 35315321
Alignment:
Q  291 caatttggagagagatagacacataaaatagataat 326  Q
    ||||||| ||||||||||||||||||||||||||||    
T  35315286 caatttgaagagagatagacacataaaatagataat 35315321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 326
Target Start/End: Original strand, 30857638 - 30857711
Alignment:
Q  252 ttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataat 326  Q
    |||||||||||| ||||| | |||||||||||| |||   |||||| |||||| |||||||| ||||||||||||    
T  30857638 ttaggatcctctccatttcacaaaataaatgga-gtatgtaatttgaagagaggtagacacaaaaaatagataat 30857711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 34512022 - 34512056
Alignment:
Q  290 acaatttggagagagatagacacataaaatagata 324  Q
    |||||||||||| ||||||||||||||||||||||    
T  34512022 acaatttggagaaagatagacacataaaatagata 34512056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 6946384 - 6946335
Alignment:
Q  250 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttgga 299  Q
    |||||||||||||  |||||||||||||||||| || | |||||||||||    
T  6946384 ggttaggatcctccccatttgataaaataaatgaaaatgcacaatttgga 6946335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 19905958 - 19905926
Alignment:
Q  291 caatttggagagagatagacacataaaatagat 323  Q
    |||||| ||||||||||||||||||||||||||    
T  19905958 caattttgagagagatagacacataaaatagat 19905926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 249 - 326
Target Start/End: Complemental strand, 47270668 - 47270592
Alignment:
Q  249 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataat 326  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||| |||| |||||||||||| |||||||||||    
T  47270668 gggttaggatcctctctatttgataaaataaatggaattacacaatttagagatagatagacacat-aaatagataat 47270592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 29844372 - 29844335
Alignment:
Q  287 tacacaatttggagagagatagacacataaaatagata 324  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29844372 tacacaatttggagagagatagacacataaaatagata 29844335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 4888579 - 4888511
Alignment:
Q  256 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    |||||||| ||||||| ||||||||||||  |   ||| ||||||||||||||||||| ||||||||||    
T  4888579 gatcctctccatttgacaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagata 4888511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 5463867 - 5463934
Alignment:
Q  256 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    |||||||| ||||||||| |||||||  | ||| |||||||||||||| ||| ||||||||||||||||    
T  5463867 gatcctctccatttgatataataaatata-gtatacaatttggagagatataaacacataaaatagata 5463934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 44648076 - 44648009
Alignment:
Q  256 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 323  Q
    |||||||| ||||||| ||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  44648076 gatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 44648009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 44390900 - 44390835
Alignment:
Q  245 agaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagaca 311  Q
    |||||||||| |||||||| |||||   |||||||||||||| |  |||||||||||||||||||||    
T  44390900 agaggggttaagatcctctccatttataaaaataaatggaag-atgcaatttggagagagatagaca 44390835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 33450627 - 33450562
Alignment:
Q  248 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacaca 313  Q
    ||||||| |||||||| |||||| |||||||||| ||  |   |||||||||||||||||||||||    
T  33450627 ggggttaagatcctctccatttgctaaaataaattgagttttgcaatttggagagagatagacaca 33450562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 322
Target Start/End: Complemental strand, 18064643 - 18064601
Alignment:
Q  278 aaatggaagtacacaatttggagagagatagacacataaaataga 322  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||    
T  18064643 aaatggaa-tacacaatt-ggagagagatagacacataaaataga 18064601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 248 - 319
Target Start/End: Original strand, 15178628 - 15178699
Alignment:
Q  248 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaat 319  Q
    ||||||||||| |||| ||||||||||||| |||||||||||| |||||| ||||||||| |||||||||||    
T  15178628 ggggttaggattctctccatttgataaaatgaatggaagtacataatttgaagagagataaacacataaaat 15178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 36532741 - 36532673
Alignment:
Q  251 gttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaata 320  Q
    |||| |||||||| ||| |||||||||||||||| || |||||||| |||||||||||||||||||||||    
T  36532741 gttaagatcctctccatctgataaaataaatgga-gttcacaatttagagagagatagacacataaaata 36532673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 319
Target Start/End: Original strand, 33841766 - 33841830
Alignment:
Q  254 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaat 319  Q
    |||||||||| |||||| |||| |||||||| ||| |||||||||||||||||||||||| |||||    
T  33841766 aggatcctctccatttgttaaagtaaatgga-gtatacaatttggagagagatagacacaaaaaat 33841830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 5815267 - 5815322
Alignment:
Q  257 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacaca 313  Q
    ||||||| ||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  5815267 atcctctccatttgataaaataaatgg-agtacaaaattttgagagagatagacaca 5815322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 23610754 - 23610687
Alignment:
Q  256 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 323  Q
    |||||||| ||||||||||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  23610754 gatcctctccatttgataaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 23610687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 42844148 - 42844216
Alignment:
Q  253 taggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaataga 322  Q
    ||||||||||| ||| | ||||||||||| ||  || |||||||||||| ||||||||||||||||||||    
T  42844148 taggatcctctccatattataaaataaatagagtta-acaatttggagatagatagacacataaaataga 42844216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 324
Target Start/End: Complemental strand, 1871392 - 1871321
Alignment:
Q  252 ttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    ||||||||||||  |||||| |||||||||||| |||  ||||||||||||||||||||| | || |||||||    
T  1871392 ttaggatcctctcaatttgacaaaataaatgga-gtatgcaatttggagagagatagacaaaaaatatagata 1871321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 323
Target Start/End: Original strand, 19901881 - 19901948
Alignment:
Q  256 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 323  Q
    |||||||| |||||| |||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  19901881 gatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 19901948  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 39862629 - 39862562
Alignment:
Q  256 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 323  Q
    |||||||| ||||||||||||||||| ||| |   ||| || |||||||||||||||| |||||||||    
T  39862629 gatcctctccatttgataaaataaatagaattttgcaagtttgagagagatagacacaaaaaatagat 39862562  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 56453777 - 56453848
Alignment:
Q  249 gggttaggatcctcttcatttgata-aaataaatggaagtacacaatttggagagagatagacacataaaatag 321  Q
    |||||| |||||||| ||||| ||| ||||||||||||| |  ||||||||||||||||||||||| |||||||    
T  56453777 gggttaagatcctctccattt-atagaaataaatggaag-atgcaatttggagagagatagacacaaaaaatag 56453848  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 5818013 - 5817977
Alignment:
Q  290 acaatttggagagagatagacacataaaatagataat 326  Q
    |||||||||||||||||||||||| |||| |||||||    
T  5818013 acaatttggagagagatagacacaaaaaagagataat 5817977  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 23474188 - 23474156
Alignment:
Q  291 caatttggagagagatagacacataaaatagat 323  Q
    |||||||| ||||||||||||||||||||||||    
T  23474188 caatttggggagagatagacacataaaatagat 23474156  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 56558400 - 56558324
Alignment:
Q  247 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 323  Q
    |||||| | |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  56558400 aggggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 56558324  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 29341106 - 29341039
Alignment:
Q  256 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    |||||||| |||||| || |||||||||| |||  ||||||||||||||||||||||| ||||||||||    
T  29341106 gatcctctccatttggtataataaatgga-gtatgcaatttggagagagatagacacagaaaatagata 29341039  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 9460597 - 9460662
Alignment:
Q  254 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaata 320  Q
    |||||||||| |||||| |||||||||| || |||  ||||||||||||||||||||||||| ||||    
T  9460597 aggatcctctccatttggtaaaataaataga-gtatgcaatttggagagagatagacacatataata 9460662  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 43309220 - 43309152
Alignment:
Q  256 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 324  Q
    ||||||||| |||||||||||||||||||  |   ||| ||||||||||||||||| | ||||||||||    
T  43309220 gatcctctttatttgataaaataaatggagttttgcaagttggagagagatagacataaaaaatagata 43309152  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 11775905 - 11775838
Alignment:
Q  256 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 323  Q
    |||||||| |||||| |||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  11775905 gatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 11775838  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 283
Target Start/End: Complemental strand, 21213987 - 21213953
Alignment:
Q  249 gggttaggatcctcttcatttgataaaataaatgg 283  Q
    ||||||||||||||| |||||||||||||||||||    
T  21213987 gggttaggatcctctccatttgataaaataaatgg 21213953  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 31653112 - 31653079
Alignment:
Q  291 caatttggagagagatagacacataaaatagata 324  Q
    ||||||||||||||||| ||||||||||||||||    
T  31653112 caatttggagagagataaacacataaaatagata 31653079  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 292 - 320
Target Start/End: Original strand, 2984389 - 2984417
Alignment:
Q  292 aatttggagagagatagacacataaaata 320  Q
    |||||||||||||||||||||||||||||    
T  2984389 aatttggagagagatagacacataaaata 2984417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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