View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15051_high_3 (Length: 306)
Name: NF15051_high_3
Description: NF15051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15051_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 161 - 304
Target Start/End: Original strand, 7037121 - 7037264
Alignment:
| Q |
161 |
gaaaagaattatgaaatatatgtgtatgtgtgtataacactcaaattgtgacatgtaacagttgatagcttcatccgctgggacattgatattttatgaa |
260 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7037121 |
gaaaagatttatgaaatatatgtgtatgtgtgtataacactcaaattgtgacatgtaacagttgatagcttcatccactgggacattgatattttatgaa |
7037220 |
T |
|
| Q |
261 |
cttcgatagtatataactactactttcatattttggggtctgtg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7037221 |
cttcgatagtatataactactactttcatattctggggtctgtg |
7037264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 7036999 - 7037058
Alignment:
| Q |
102 |
taatttaatataatcacagttcatgcatcttttaatacattcatttctatctagttatcg |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036999 |
taatttaatataatcacagttcatgcatcttttaatacattcatttctatctagttatcg |
7037058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 7036956 - 7037012
Alignment:
| Q |
1 |
ctaagctaagtcaaatgagaa--gagcaatttcaaatcattcataatttaatataat |
55 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7036956 |
ctaagctaagtcaaatgagaatagagcaatttcaaatcattcataatttaatataat |
7037012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 7036907 - 7036955
Alignment:
| Q |
56 |
tttcctacacaaataaaatacaaacagtaagtatttagaaaagtagtaa |
104 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7036907 |
tttcctacacaaataaaatacaaccagtaagtatttagaaaagtagtaa |
7036955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 1379282 - 1379333
Alignment:
| Q |
56 |
tttcctacacaaataaaatacaaacag-taagtatttagaaaagtagtaatt |
106 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
1379282 |
tttcctacacaaataaaatacaaacagttaagtatttagaaaagtaataatt |
1379333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 7313035 - 7313086
Alignment:
| Q |
56 |
tttcctacacaaataaaatacaaacag-taagtatttagaaaagtagtaatt |
106 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||| ||||| |
|
|
| T |
7313035 |
tttcctacacaaataaaatacaaacagttaaatatttagaaaagtaataatt |
7313086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 29377565 - 29377616
Alignment:
| Q |
107 |
taatataatcacagttcatgcatcttttaatacattcatttctatctagtta |
158 |
Q |
| |
|
||||||||||||| ||||| ||| |||| |||||||| |||||||||||||| |
|
|
| T |
29377565 |
taatataatcacaattcatacatattttcatacattcctttctatctagtta |
29377616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University