View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15051_high_5 (Length: 266)

Name: NF15051_high_5
Description: NF15051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15051_high_5
NF15051_high_5
[»] chr2 (7 HSPs)
chr2 (16-259)||(27309552-27309794)
chr2 (86-165)||(45071579-45071658)
chr2 (86-162)||(27242734-27242810)
chr2 (104-152)||(28811272-28811320)
chr2 (102-177)||(38434153-38434228)
chr2 (93-195)||(18569454-18569557)
chr2 (85-185)||(10605440-10605540)
[»] chr4 (5 HSPs)
chr4 (93-162)||(34417368-34417437)
chr4 (93-195)||(13485343-13485445)
chr4 (93-144)||(34581614-34581665)
chr4 (133-195)||(2619178-2619240)
chr4 (106-195)||(48724391-48724480)
[»] chr7 (3 HSPs)
chr7 (99-195)||(28071445-28071541)
chr7 (93-124)||(18679428-18679459)
chr7 (132-177)||(34925273-34925318)
[»] chr6 (9 HSPs)
chr6 (93-156)||(19390979-19391042)
chr6 (84-121)||(14343448-14343485)
chr6 (93-168)||(653382-653457)
chr6 (74-196)||(1912429-1912551)
chr6 (97-195)||(7939914-7940012)
chr6 (132-177)||(30530004-30530049)
chr6 (74-139)||(31456507-31456572)
chr6 (133-193)||(19041610-19041670)
chr6 (93-177)||(33532433-33532517)
[»] chr1 (7 HSPs)
chr1 (93-168)||(24808384-24808459)
chr1 (74-167)||(50322057-50322149)
chr1 (84-156)||(43391497-43391569)
chr1 (79-159)||(400916-400996)
chr1 (135-195)||(15707557-15707617)
chr1 (91-175)||(29928254-29928338)
chr1 (95-139)||(32029890-32029934)
[»] chr8 (3 HSPs)
chr8 (96-166)||(29749259-29749329)
chr8 (93-126)||(44806293-44806326)
chr8 (82-118)||(14242135-14242171)
[»] chr5 (7 HSPs)
chr5 (102-168)||(42440139-42440205)
chr5 (94-167)||(40677919-40677992)
chr5 (101-157)||(36265081-36265137)
chr5 (93-196)||(34156691-34156794)
chr5 (93-142)||(14761027-14761076)
chr5 (83-163)||(9492055-9492135)
chr5 (104-168)||(11295830-11295893)
[»] chr3 (5 HSPs)
chr3 (77-126)||(25519477-25519526)
chr3 (86-126)||(38692428-38692468)
chr3 (106-174)||(50376278-50376346)
chr3 (93-177)||(36303126-36303210)
chr3 (93-169)||(54838617-54838693)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 27309552 - 27309794
Alignment:
Q  16 caatgttatcagatagggagactatagcactataacatagtaaattgaaacagaccgttattattctacgatacacgatttagtataaagtgttgtcaaa 115  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27309552 caatgttatcaaatagggaggctatagcactataacat-gtaaattgaaacagaccgttactattctacgatacacgatttagtataaagtgttgtcaaa 27309650  T
Q  116 tagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaaccgatattttcagcaatctgtgattgacacgctagaaattgcaaannnn 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  27309651 tagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaaccgatattttcagcaatctgtgattgacacgctagaaattgcaattttt 27309750  T
Q  216 nnnagtgacattacagtcatcaaaactagttaaatgcatctctg 259  Q
       |||||||||||||||||||||||||||||||||||||||||    
T  27309751 tttagtgacattacagtcatcaaaactagttaaatgcatctctg 27309794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 45071658 - 45071579
Alignment:
Q  86 atacacgatttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaa 165  Q
    |||| ||||| |||| |||||||||||||||||| | ||||  ||||||| ||||||||||||||||||||| |||||||    
T  45071658 atacgcgattaagtacaaagtgttgtcaaatagcagctatagcagtgctacagcactgtagcatagcagaatttgaacaa 45071579  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 27242810 - 27242734
Alignment:
Q  86 atacacgatttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaa 162  Q
    ||||||||||||||| |||||||||||||||| ||| ||||  ||  |||||||| ||||| |||||||||| ||||    
T  27242810 atacacgatttagtacaaagtgttgtcaaataacggctataccagcactatagcattgtaggatagcagaatttgaa 27242734  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 28811272 - 28811320
Alignment:
Q  104 agtgttgtcaaatagcggatataatagtgctatagcactgtagcatagc 152  Q
    |||||||||||||||||| |||| | |||||||||||||||||||||||    
T  28811272 agtgttgtcaaatagcggctatagtggtgctatagcactgtagcatagc 28811320  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 38434153 - 38434228
Alignment:
Q  102 aaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaaccgatattttc 177  Q
    |||||||||| ||||||||  ||||  | ||||||||||||||| ||||||||||| ||||||||| | |||||||    
T  38434153 aaagtgttgttaaatagcgattatagcattgctatagcactgtaacatagcagaatttgaacaaactgctattttc 38434228  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 195
Target Start/End: Original strand, 18569454 - 18569557
Alignment:
Q  93 atttagtataaagtgttgtcaaatagcggatata-atagtgctatagcactgtagcatagcagaatatgaacaaaccgatattttcagcaatctgtgatt 191  Q
    ||||||||||||||||||||||||||| | |||| | |     ||||||||||||  ||||||||| ||||||||||| ||||| | || | ||||||||    
T  18569454 atttagtataaagtgttgtcaaatagccgctatagagacataaatagcactgtagtgtagcagaatttgaacaaaccgctatttcccgcgacctgtgatt 18569553  T
Q  192 gaca 195  Q
    ||||    
T  18569554 gaca 18569557  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 10605540 - 10605440
Alignment:
Q  85 gatacacgatttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaaccgatattttcagcaatc 184  Q
    ||||||| ||||| || ||| | ||||||||||| || ||||   ||| ||||||||||  |||||||||||| |||||| |||| | ||||| ||||||    
T  10605540 gatacactatttaatacaaaatcttgtcaaatagtggctatatcggtgttatagcactggtgcatagcagaatctgaacagaccgctgttttctgcaatc 10605441  T
Q  185 t 185  Q
    |    
T  10605440 t 10605440  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 34417368 - 34417437
Alignment:
Q  93 atttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaa 162  Q
    |||||||| |||||||||||||||||| | |||  | |||||||||||| ||||||||||||||| ||||    
T  34417368 atttagtacaaagtgttgtcaaatagccgctattgtggtgctatagcacggtagcatagcagaatttgaa 34417437  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 195
Target Start/End: Original strand, 13485343 - 13485445
Alignment:
Q  93 atttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaaccgatattttcagcaatctgtgattg 192  Q
    ||||||||  |||||||||||||||  || ||||  || |||| |||||| |||||||| | ||| ||||||||||| | ||||| || |||||||||||    
T  13485343 atttagtaggaagtgttgtcaaataatggttatagcagcgctaaagcactatagcataggaaaatttgaacaaaccgctgttttccgcgatctgtgattg 13485442  T
Q  193 aca 195  Q
    |||    
T  13485443 aca 13485445  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 34581614 - 34581665
Alignment:
Q  93 atttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgt 144  Q
    |||||||| ||| |||||||||||||||| |||| ||| |||||||||||||    
T  34581614 atttagtacaaaatgttgtcaaatagcggctatagtagcgctatagcactgt 34581665  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 2619178 - 2619240
Alignment:
Q  133 ctatagcactgtagcatagcagaatatgaacaaaccgatattttcagcaatctgtgattgaca 195  Q
    |||||||||||| |||||||||||| | ||||||| ||||||||  ||||||||  |||||||    
T  2619178 ctatagcactgtcgcatagcagaattttaacaaactgatattttttgcaatctgcaattgaca 2619240  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 48724480 - 48724391
Alignment:
Q  106 tgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaaccgatattttcagcaatctgtgattgaca 195  Q
    ||||||||||||| |  |||||| |||||||||||||| ||  ||||||||| || |||||| | |||||| ||| ||| | ||||||||    
T  48724480 tgttgtcaaatagtgactataatggtgctatagcactgcagtgtagcagaatttggacaaacagctatttttagcgatccgagattgaca 48724391  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 28071445 - 28071541
Alignment:
Q  99 tataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaaccgatattttcagcaatctgtgattgaca 195  Q
    ||||||||||||||||||||||| |||   ||||||||| || |||| |||||  |||| ||||||||||| ||||| |  ||||||| ||||||||    
T  28071445 tataaagtgttgtcaaatagcggttatggcagtgctataacattgtaacatagtggaatttgaacaaaccgctatttcccacaatctgcgattgaca 28071541  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 124
Target Start/End: Original strand, 18679428 - 18679459
Alignment:
Q  93 atttagtataaagtgttgtcaaatagcggata 124  Q
    ||||||||||||||||||||||||||||||||    
T  18679428 atttagtataaagtgttgtcaaatagcggata 18679459  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 34925318 - 34925273
Alignment:
Q  132 gctatagcactgtagcatagcagaatatgaacaaaccgatattttc 177  Q
    ||||||||| |||||||||||||||| ||||||||| | |||||||    
T  34925318 gctatagcattgtagcatagcagaatttgaacaaactgctattttc 34925273  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 19390979 - 19391042
Alignment:
Q  93 atttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaa 156  Q
    |||||||| ||||| |||||||||||| | |||| | | |||||||||||||||||||||||||    
T  19390979 atttagtacaaagtattgtcaaatagcagttatagtggcgctatagcactgtagcatagcagaa 19391042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 14343485 - 14343448
Alignment:
Q  84 cgatacacgatttagtataaagtgttgtcaaatagcgg 121  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  14343485 cgatacacgatttagtaaaaagtgttgtcaaatagcgg 14343448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 653382 - 653457
Alignment:
Q  93 atttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaacc 168  Q
    |||||| | ||| ||||||||||||||  |||||   |||||||||||||| | ||||||||||| ||||||||||    
T  653382 atttagcacaaactgttgtcaaatagcatatatagccgtgctatagcactgcaacatagcagaatttgaacaaacc 653457  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 1912551 - 1912429
Alignment:
Q  74 tattattctacgatacacgatttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaaccgatat 173  Q
    |||| |||| ||||| || |||||||| ||| | |||||||||||||  |||| |   |||||||||| || ||||||| |||| ||||||||||  |||    
T  1912551 tattgttctgcgatatactatttagtacaaattattgtcaaatagcgactatagtgacgctatagcaccgttgcatagcggaatttgaacaaacctctat 1912452  T
Q  174 tttcagcaatctgtgattgacac 196  Q
    |||| || ||| || ||||||||    
T  1912451 tttccgcgatccgtaattgacac 1912429  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 7939914 - 7940012
Alignment:
Q  97 agtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaaccgatattttcagcaatctgtgattgaca 195  Q
    |||| |||||| ||||||||||||| |||| | |  |||||||||||||||||||| |||| ||| ||| ||  ||||||   |||||||| |||||||    
T  7939914 agtacaaagtgatgtcaaatagcggctatagtggctctatagcactgtagcatagcggaatttgatcaaccccctatttttcacaatctgtaattgaca 7940012  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 30530049 - 30530004
Alignment:
Q  132 gctatagcactgtagcatagcagaatatgaacaaaccgatattttc 177  Q
    ||||||||||||| || ||||||||| ||||||||||| |||||||    
T  30530049 gctatagcactgttgcgtagcagaatttgaacaaaccgctattttc 30530004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 31456507 - 31456572
Alignment:
Q  74 tattattctacgatacacgatttagtataaagtgttgtcaaatagcggatataatagtgctatagc 139  Q
    |||| ||||| ||| |||||||||||  ||| ||||||||||||| |||||||| |||| ||||||    
T  31456507 tattgttctatgatgcacgatttagttcaaaatgttgtcaaatagtggatataacagtgatatagc 31456572  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 19041610 - 19041670
Alignment:
Q  133 ctatagcactgtagcatagcagaatatgaacaaaccgatattttcagcaatctgtgattga 193  Q
    ||||||||||||||| ||||||||| |||| |||| | ||||||| || ||||| ||||||    
T  19041610 ctatagcactgtagcgtagcagaatttgaataaactgttattttctgctatctgcgattga 19041670  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 33532517 - 33532433
Alignment:
Q  93 atttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaaccgatattttc 177  Q
    |||||||| | | |||||||||| ||| | |||| | | ||||||||||||| |  ||||||||| ||||||||||| |||||||    
T  33532517 atttagtacagaatgttgtcaaacagcagctatagttgcgctatagcactgttgagtagcagaatttgaacaaaccgctattttc 33532433  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 24808384 - 24808459
Alignment:
Q  93 atttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaacc 168  Q
    |||||||  ||||||||||||||||  ||  |||  ||||||| ||||||||||||||||||||| ||||||||||    
T  24808384 atttagttcaaagtgttgtcaaataatggtcatagcagtgctaaagcactgtagcatagcagaatttgaacaaacc 24808459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 50322057 - 50322149
Alignment:
Q  74 tattattctacgatacacgatttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaac 167  Q
    |||| ||||||||||||| |||||||||||| | ||||||||| || | ||| || ||||||||||| |||| | ||||||||| | |||||||    
T  50322057 tattgttctacgatacacaatttagtataaaatattgtcaaattgcagctatgat-gtgctatagcattgtaccgtagcagaatttaaacaaac 50322149  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 43391569 - 43391497
Alignment:
Q  84 cgatacacgatttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaa 156  Q
    |||| ||| |||||||| ||| ||||||||||| |||| ||||  | |||||||||||||| |||||||||||    
T  43391569 cgatgcactatttagtacaaaatgttgtcaaatggcggctatagcattgctatagcactgttgcatagcagaa 43391497  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 400916 - 400996
Alignment:
Q  79 ttctacgatacacgatttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatat 159  Q
    |||| ||||| || |||||||| ||||| |||||||||||  | |||| | | |||| ||| |||||||||||||||||||    
T  400916 ttctgcgatatacaatttagtacaaagtattgtcaaatagaagttatagtggcgctacagcgctgtagcatagcagaatat 400996  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 15707617 - 15707557
Alignment:
Q  135 atagcactgtagcatagcagaatatgaacaaaccgatattttcagcaatctgtgattgaca 195  Q
    |||||||| ||||||||| |||| ||||||||| | ||||||   ||||||||||||||||    
T  15707617 atagcactatagcatagcggaatttgaacaaactgctattttttacaatctgtgattgaca 15707557  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 29928254 - 29928338
Alignment:
Q  91 cgatttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaaccgatattt 175  Q
    |||||||||||||||||||| |||| || || ||||   | ||| ||||||| |||||||| | ||| ||||||||||| |||||    
T  29928254 cgatttagtataaagtgttgccaaacagaggctatagccgcgctctagcactatagcatagaaaaatttgaacaaaccgctattt 29928338  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 32029934 - 32029890
Alignment:
Q  95 ttagtataaagtgttgtcaaatagcggatataatagtgctatagc 139  Q
    ||||||||||||||||||||||||| | |||| ||| ||||||||    
T  32029934 ttagtataaagtgttgtcaaatagcagctatagtagcgctatagc 32029890  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 29749259 - 29749329
Alignment:
Q  96 tagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaa 166  Q
    ||||| |||||||||| ||||||| | ||||  || |||||||||||||||||||||| ||| ||||||||    
T  29749259 tagtaaaaagtgttgttaaatagcagttatagcagcgctatagcactgtagcatagcaaaatttgaacaaa 29749329  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 44806293 - 44806326
Alignment:
Q  93 atttagtataaagtgttgtcaaatagcggatata 126  Q
    |||||||| |||||||||||||||||||||||||    
T  44806293 atttagtacaaagtgttgtcaaatagcggatata 44806326  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 14242135 - 14242171
Alignment:
Q  82 tacgatacacgatttagtataaagtgttgtcaaatag 118  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  14242135 tacgatacacgatttagcataaagtgttttcaaatag 14242171  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 42440139 - 42440205
Alignment:
Q  102 aaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaacc 168  Q
    ||||| ||||||||||| || ||||  ||||||||| |||||||||||||| |||| ||||||||||    
T  42440139 aaagttttgtcaaatagaggctatagcagtgctataacactgtagcatagcggaatttgaacaaacc 42440205  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 40677992 - 40677919
Alignment:
Q  94 tttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaac 167  Q
    ||||||| |||  ||||||||||||||| ||||| || ||||||||||  || ||||||||||| |||||||||    
T  40677992 tttagtacaaaaagttgtcaaatagcggctataacagcgctatagcaccatatcatagcagaatttgaacaaac 40677919  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 36265137 - 36265081
Alignment:
Q  101 taaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaat 157  Q
    ||||||||||||||||||||| | || |||||||| |  ||||||||||||||||||    
T  36265137 taaagtgttgtcaaatagcggttgtagtagtgctacaatactgtagcatagcagaat 36265081  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 34156691 - 34156794
Alignment:
Q  93 atttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaaccgatattttcagcaatctgtgattg 192  Q
    |||||||  ||| |||||| |||||||   |||| | ||||||||||||||| |||||||||||| ||||||||| | ||| ||| || ||  |||||||    
T  34156691 atttagtgcaaaatgttgttaaatagcaactatatttgtgctatagcactgttgcatagcagaatttgaacaaacagctatcttctgcgattggtgattg 34156790  T
Q  193 acac 196  Q
    ||||    
T  34156791 acac 34156794  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 14761027 - 14761076
Alignment:
Q  93 atttagtataaagtgttgtcaaatagcggatataatagtgctatagcact 142  Q
    |||||||||||| |||||||||||||||| || | | |||||||||||||    
T  14761027 atttagtataaaatgttgtcaaatagcggttacacttgtgctatagcact 14761076  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 9492055 - 9492135
Alignment:
Q  83 acgatacacgatttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaac 163  Q
    |||||||| |||| |||| |||||||||||| | ||  | |||  || ||||||||||||||||| ||||||||| |||||    
T  9492055 acgatacaggattcagtacaaagtgttgtcagacagttgctattgtattgctatagcactgtagcttagcagaatttgaac 9492135  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 11295830 - 11295893
Alignment:
Q  104 agtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaacc 168  Q
    |||||| ||||||||| | ||||   ||||||||||||||||||| |||||||| ||||||||||    
T  11295830 agtgttatcaaatagcagctatagatgtgctatagcactgtagca-agcagaatttgaacaaacc 11295893  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 25519526 - 25519477
Alignment:
Q  77 tattctacgatacacgatttagtataaagtgttgtcaaatagcggatata 126  Q
    ||||||| |||||||||||||||| ||| |||||||||||||||| ||||    
T  25519526 tattctatgatacacgatttagtacaaattgttgtcaaatagcggctata 25519477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 38692468 - 38692428
Alignment:
Q  86 atacacgatttagtataaagtgttgtcaaatagcggatata 126  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  38692468 atacacgatttagtacaaagtgttgtcaaatagcggctata 38692428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 50376346 - 50376278
Alignment:
Q  106 tgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaaccgatatt 174  Q
    |||||||||||||| | || |  |||||||||||||||||||||||| |||| | ||||||||| ||||    
T  50376346 tgttgtcaaatagcagctacagcagtgctatagcactgtagcatagcggaattttaacaaaccgttatt 50376278  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 36303126 - 36303210
Alignment:
Q  93 atttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaaccgatattttc 177  Q
    |||||||  |||||||||||||||||| |  ||  | |||||||||| |||||  ||||| |||| ||||||||||| |||||||    
T  36303126 atttagttcaaagtgttgtcaaatagctggaatggtggtgctatagcgctgtactatagcggaatttgaacaaaccgctattttc 36303210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 54838617 - 54838693
Alignment:
Q  93 atttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaaccg 169  Q
    |||||||| ||| ||||||||||||| || || |||   ||||||||||||| ||| ||| |||| |||||||||||    
T  54838617 atttagtacaaaatgttgtcaaatagtggctaaaatgccgctatagcactgttgcacagcggaatttgaacaaaccg 54838693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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