View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15051_low_9 (Length: 227)

Name: NF15051_low_9
Description: NF15051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15051_low_9
NF15051_low_9
[»] chr5 (21 HSPs)
chr5 (1-139)||(31860802-31860940)
chr5 (177-227)||(6043525-6043575)
chr5 (177-227)||(2477637-2477687)
chr5 (177-227)||(3362779-3362829)
chr5 (177-227)||(11361145-11361195)
chr5 (177-227)||(38899740-38899790)
chr5 (180-227)||(8145379-8145426)
chr5 (177-224)||(14138669-14138716)
chr5 (177-227)||(4892203-4892253)
chr5 (177-227)||(12850802-12850852)
chr5 (177-227)||(22913068-22913118)
chr5 (177-227)||(25398239-25398289)
chr5 (177-227)||(33584343-33584393)
chr5 (177-226)||(4434022-4434071)
chr5 (177-227)||(37321807-37321858)
chr5 (177-227)||(3522020-3522070)
chr5 (177-227)||(12614747-12614797)
chr5 (180-227)||(27481830-27481877)
chr5 (177-227)||(17545699-17545749)
chr5 (188-227)||(10458409-10458448)
chr5 (177-213)||(13664643-13664679)
[»] scaffold0178 (1 HSPs)
scaffold0178 (177-227)||(11622-11672)
[»] chr8 (30 HSPs)
chr8 (177-227)||(32064746-32064796)
chr8 (177-227)||(34665383-34665433)
chr8 (177-226)||(15187561-15187610)
chr8 (177-225)||(24211569-24211617)
chr8 (177-227)||(17841864-17841914)
chr8 (177-227)||(20091815-20091865)
chr8 (177-227)||(26042130-26042180)
chr8 (177-227)||(32393859-32393909)
chr8 (177-227)||(40780143-40780193)
chr8 (177-227)||(42755056-42755106)
chr8 (179-227)||(8453837-8453885)
chr8 (176-227)||(14128864-14128915)
chr8 (184-227)||(38016979-38017022)
chr8 (177-223)||(1645983-1646029)
chr8 (177-227)||(35353042-35353092)
chr8 (180-227)||(37986069-37986116)
chr8 (177-227)||(31347796-31347846)
chr8 (177-227)||(39772815-39772865)
chr8 (176-227)||(27782131-27782182)
chr8 (177-227)||(6108247-6108297)
chr8 (177-227)||(7017879-7017929)
chr8 (181-227)||(25581253-25581299)
chr8 (177-227)||(27835467-27835517)
chr8 (177-227)||(37132672-37132722)
chr8 (177-226)||(41819793-41819842)
chr8 (186-226)||(7021988-7022028)
chr8 (180-227)||(24844872-24844919)
chr8 (177-220)||(30055544-30055587)
chr8 (180-226)||(3890413-3890459)
chr8 (177-227)||(30835061-30835110)
[»] chr7 (17 HSPs)
chr7 (177-227)||(4974749-4974799)
chr7 (177-227)||(15329274-15329324)
chr7 (177-227)||(15577864-15577914)
chr7 (177-227)||(42611812-42611862)
chr7 (177-227)||(45637713-45637763)
chr7 (177-227)||(48880941-48880991)
chr7 (177-227)||(3961980-3962030)
chr7 (177-227)||(20010111-20010161)
chr7 (177-227)||(24394973-24395023)
chr7 (177-227)||(34482836-34482886)
chr7 (177-227)||(35444559-35444609)
chr7 (177-227)||(25167864-25167914)
chr7 (177-227)||(37477094-37477144)
chr7 (179-227)||(36790480-36790528)
chr7 (180-227)||(29737143-29737190)
chr7 (177-227)||(15238383-15238433)
chr7 (177-227)||(18036979-18037029)
[»] chr6 (16 HSPs)
chr6 (177-227)||(28675149-28675199)
chr6 (177-227)||(33695341-33695391)
chr6 (177-227)||(33696697-33696747)
chr6 (177-227)||(6127276-6127326)
chr6 (177-227)||(17176035-17176085)
chr6 (177-227)||(17705479-17705529)
chr6 (177-227)||(18365587-18365637)
chr6 (177-227)||(18370851-18370901)
chr6 (177-227)||(23291098-23291148)
chr6 (177-227)||(25986931-25986981)
chr6 (177-227)||(18889711-18889760)
chr6 (177-227)||(6031755-6031805)
chr6 (182-227)||(11548602-11548647)
chr6 (179-211)||(8515755-8515787)
chr6 (187-226)||(32702216-32702255)
chr6 (177-209)||(2309455-2309487)
[»] chr4 (23 HSPs)
chr4 (177-227)||(10442803-10442853)
chr4 (177-227)||(22199262-22199312)
chr4 (177-227)||(31078833-31078883)
chr4 (177-227)||(36072948-36072998)
chr4 (177-227)||(49387902-49387952)
chr4 (177-226)||(2624838-2624887)
chr4 (177-227)||(4751447-4751497)
chr4 (177-227)||(7745126-7745176)
chr4 (177-227)||(21802336-21802386)
chr4 (177-227)||(24128240-24128290)
chr4 (177-227)||(33530702-33530752)
chr4 (177-227)||(47290067-47290117)
chr4 (180-227)||(36073354-36073401)
chr4 (177-227)||(24392668-24392718)
chr4 (177-227)||(44893427-44893477)
chr4 (177-227)||(46441845-46441895)
chr4 (177-227)||(53123031-53123082)
chr4 (177-227)||(23964479-23964529)
chr4 (177-227)||(37934955-37935005)
chr4 (177-227)||(50156592-50156642)
chr4 (180-227)||(25063373-25063420)
chr4 (177-227)||(44893227-44893278)
chr4 (182-227)||(42671675-42671720)
[»] chr3 (27 HSPs)
chr3 (177-227)||(6041885-6041935)
chr3 (177-227)||(2754718-2754768)
chr3 (177-227)||(3137428-3137478)
chr3 (177-227)||(3574541-3574591)
chr3 (177-227)||(11347269-11347319)
chr3 (177-227)||(37217067-37217117)
chr3 (177-227)||(42297354-42297404)
chr3 (177-226)||(3456065-3456114)
chr3 (177-226)||(34482925-34482974)
chr3 (177-226)||(48160906-48160955)
chr3 (177-224)||(33113794-33113841)
chr3 (177-227)||(30385012-30385062)
chr3 (177-226)||(8320599-8320648)
chr3 (177-227)||(9797043-9797093)
chr3 (177-227)||(19650914-19650964)
chr3 (177-227)||(37522054-37522104)
chr3 (187-227)||(42921154-42921194)
chr3 (177-220)||(24343548-24343591)
chr3 (177-227)||(22426358-22426408)
chr3 (177-227)||(33145714-33145763)
chr3 (177-227)||(36865041-36865091)
chr3 (179-213)||(40327878-40327912)
chr3 (177-227)||(41224234-41224284)
chr3 (180-227)||(40328051-40328098)
chr3 (185-227)||(33839755-33839797)
chr3 (177-207)||(47402630-47402660)
chr3 (188-226)||(47738117-47738155)
[»] chr1 (19 HSPs)
chr1 (177-227)||(40214989-40215039)
chr1 (180-227)||(16045812-16045859)
chr1 (177-227)||(9910307-9910357)
chr1 (177-227)||(18404443-18404493)
chr1 (177-227)||(44094699-44094749)
chr1 (177-226)||(19015405-19015454)
chr1 (177-226)||(36966723-36966772)
chr1 (177-226)||(37821849-37821898)
chr1 (177-227)||(25463677-25463727)
chr1 (177-227)||(25973415-25973465)
chr1 (177-227)||(32000281-32000331)
chr1 (179-227)||(3559620-3559668)
chr1 (177-227)||(6883488-6883538)
chr1 (177-227)||(40273703-40273753)
chr1 (177-227)||(41876456-41876506)
chr1 (177-213)||(34519759-34519795)
chr1 (177-213)||(51620981-51621017)
chr1 (180-224)||(27523054-27523098)
chr1 (177-213)||(52329320-52329356)
[»] chr2 (16 HSPs)
chr2 (177-226)||(21936082-21936131)
chr2 (177-227)||(7475522-7475572)
chr2 (177-227)||(9293590-9293640)
chr2 (177-227)||(10661888-10661938)
chr2 (177-227)||(23268076-23268126)
chr2 (177-227)||(35160758-35160808)
chr2 (177-226)||(13354847-13354896)
chr2 (177-227)||(33380208-33380258)
chr2 (179-227)||(31174848-31174896)
chr2 (177-227)||(14941380-14941430)
chr2 (177-227)||(43330913-43330963)
chr2 (178-227)||(21393702-21393751)
chr2 (180-227)||(22592932-22592979)
chr2 (177-227)||(9723406-9723456)
chr2 (177-227)||(27847633-27847683)
chr2 (179-213)||(40262714-40262748)
[»] scaffold0471 (1 HSPs)
scaffold0471 (177-227)||(12843-12893)
[»] scaffold0096 (1 HSPs)
scaffold0096 (177-227)||(41012-41062)
[»] scaffold0085 (1 HSPs)
scaffold0085 (177-227)||(47851-47901)
[»] scaffold0665 (1 HSPs)
scaffold0665 (176-227)||(3068-3119)
[»] scaffold0204 (1 HSPs)
scaffold0204 (177-227)||(4397-4447)
[»] scaffold0228 (3 HSPs)
scaffold0228 (187-227)||(8413-8453)
scaffold0228 (187-227)||(15995-16035)
scaffold0228 (187-227)||(25947-25987)


Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 31860802 - 31860940
Alignment:
Q  1 tatgcttgtagttgatgactccatgtgaagactctcattaatgcaaagcaagtttttgagctgtacttgtcactaactagaaggaactctacttagctac 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31860802 tatgcttgtagttgatgactccatgtgaagactctcattattgcaacgcaagtttttgagctgtacttgtcactaactagaaggaactctacttagctac 31860901  T
Q  101 agtgacgcagtttgattaatttttaattagtgtagatag 139  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31860902 agtgacgcagtttgattaatttttaattagtgtagatag 31860940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 6043575 - 6043525
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6043575 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 6043525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 2477637 - 2477687
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2477637 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 2477687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 3362779 - 3362829
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3362779 agcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgac 3362829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 11361195 - 11361145
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11361195 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 11361145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 38899790 - 38899740
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38899790 agcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgac 38899740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 8145379 - 8145426
Alignment:
Q  180 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  8145379 aatgttatatatcaagaaagattttatcaagaaaatttcaagaatgac 8145426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 14138669 - 14138716
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaat 224  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14138669 agcaatgttatatatcaagaaagattttatcaagaaaatttcaagaat 14138716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 4892203 - 4892253
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  4892203 agcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgac 4892253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 12850802 - 12850852
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  12850802 agcaatgctatatatcaagaaagattttatcaagaaaattccaaaaatgac 12850852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 22913118 - 22913068
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  22913118 agcaatgctatatatcaagaaagattttttcaagaaaaattcaagaatgac 22913068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 25398239 - 25398289
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  25398239 agcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgac 25398289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 33584393 - 33584343
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  33584393 agcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgac 33584343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 4434071 - 4434022
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 226  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||    
T  4434071 agcaatgctatatatcaagaaagatttttttaagaaaatttcaagaatga 4434022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 37321858 - 37321807
Alignment:
Q  177 agcaatgctatatatc-aagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  37321858 agcaatgctatatatctaagaaagattttatcaagaaaattttaagaatgac 37321807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 3522070 - 3522020
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||| |||||||||||||||||||| ||||||||||||||| ||||||    
T  3522070 agcaatgttatatatcaagaaagattttttcaagaaaatttcaaaaatgac 3522020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 12614797 - 12614747
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  12614797 agcaatgctatatatcaagaaatattttatcaagaaagattcaagaatgac 12614747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 27481830 - 27481877
Alignment:
Q  180 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||| ||| |||||||||||||||||||||| ||||||||||||    
T  27481830 aatgctatgtattaagaaagattttatcaagaaaaattcaagaatgac 27481877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 17545749 - 17545699
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||| | ||| ||||||||| ||||||||||||    
T  17545749 agcaatgctatatatcaagaaaaaatttctcaagaaaaattcaagaatgac 17545699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 10458409 - 10458448
Alignment:
Q  188 atatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  10458409 atatcaagaaaaattttatcaagaaaaattcaagaatgac 10458448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 13664643 - 13664679
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaa 213  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  13664643 agcaatgttatatattaagaaagattttatcaagaaa 13664679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 11622 - 11672
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11622 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 11672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 32064746 - 32064796
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32064746 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 32064796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 34665383 - 34665433
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34665383 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 34665433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 15187561 - 15187610
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15187561 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 15187610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 24211617 - 24211569
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatg 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24211617 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatg 24211569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 17841914 - 17841864
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17841914 agcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 17841864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 20091865 - 20091815
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20091865 agcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgac 20091815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 26042180 - 26042130
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26042180 agcaatgctatatattaagaaagattttatcaagaaaatttcaagaatgac 26042130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 32393859 - 32393909
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32393859 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 32393909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 40780193 - 40780143
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40780193 agcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 40780143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 42755106 - 42755056
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42755106 agcaatgatatatatcaagaaagattttatcaagaaaatttcaagaatgac 42755056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 8453837 - 8453885
Alignment:
Q  179 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8453837 caatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 8453885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 14128864 - 14128915
Alignment:
Q  176 cagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  14128864 cagcaatgctatatatcaagaaagattttatcaataaaattttaagaatgac 14128915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 38016979 - 38017022
Alignment:
Q  184 ctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  38016979 ctatatatcaagaaagattttatcaagaaaatttcaagaatgac 38017022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 1646029 - 1645983
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  1646029 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaa 1645983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 35353042 - 35353092
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  35353042 agcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgac 35353092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 37986116 - 37986069
Alignment:
Q  180 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||    
T  37986116 aatgctatatatcaagaaagattttatcaaaaaaattttaagaatgac 37986069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 31347846 - 31347796
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  31347846 agcaatgctatatatcaagaaatattttctcaagaaaaattcaagaatgac 31347796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 39772865 - 39772815
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||| |||||||||||||| |||||||||| |||||||||||||||||    
T  39772865 agcaatgttatatatcaagaaatattttatcaaaaaaatttcaagaatgac 39772815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 27782182 - 27782131
Alignment:
Q  176 cagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||| ||||||||||||||  ||||| ||||||    
T  27782182 cagcaatgctatatatcaagaaatattttatcaagaaagattcaataatgac 27782131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 6108297 - 6108247
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||| |||||||||||||||||||| | |||||||||| |||||||||    
T  6108297 agcaatgttatatatcaagaaagatttttttaagaaaattttaagaatgac 6108247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 7017929 - 7017879
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||| |||||||||| | ||||||| ||||||||||||    
T  7017929 agcaatgctatatatcatgaaagattttcttaagaaaaattcaagaatgac 7017879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 25581299 - 25581253
Alignment:
Q  181 atgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||| |||||  ||||||||||||||||||||    
T  25581299 atgctatatatcaagaaagtttttacgaagaaaatttcaagaatgac 25581253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 27835517 - 27835467
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||| |||||| |||| ||||||| ||||||||||||    
T  27835517 agcaatgctatatatcaataaagatcttattaagaaaaattcaagaatgac 27835467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 37132722 - 37132672
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||| ||| ||||||||||||||| || |||||||||    
T  37132722 agcaatgctatatatcaaaaaatattttatcaagaaaaatttaagaatgac 37132672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 41819842 - 41819793
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 226  Q
    ||||||| ||||||||||||||||||||||||||||  ||| ||||||||    
T  41819842 agcaatgttatatatcaagaaagattttatcaagaatgttttaagaatga 41819793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 7021988 - 7022028
Alignment:
Q  186 atatatcaagaaagattttatcaagaaaatttcaagaatga 226  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  7021988 atatatcaagaaagattttctcaagaaaaattcaagaatga 7022028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 24844919 - 24844872
Alignment:
Q  180 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||| ||||||||||| ||||||| ||||||| ||||||||||||    
T  24844919 aatgctacatatcaagaaatattttattaagaaaaattcaagaatgac 24844872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 30055544 - 30055587
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaa 220  Q
    |||||||||||||| |||| ||||||||||||| ||||||||||    
T  30055544 agcaatgctatataccaaggaagattttatcaaaaaaatttcaa 30055587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 3890413 - 3890459
Alignment:
Q  180 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 226  Q
    ||||||| |||||||||| |||||||||||||||  |||||||||||    
T  3890413 aatgctagatatcaagaatgattttatcaagaaagattcaagaatga 3890459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 30835110 - 30835061
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||| ||||||||||||||||||||||| | |||| ||||||||||||    
T  30835110 agcaatgttatatatcaagaaagattttatcga-aaaaattcaagaatgac 30835061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 4974799 - 4974749
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4974799 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 4974749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 15329274 - 15329324
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15329274 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 15329324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 15577914 - 15577864
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15577914 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 15577864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 42611812 - 42611862
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42611812 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 42611862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 45637713 - 45637763
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45637713 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 45637763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 48880991 - 48880941
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48880991 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 48880941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 3961980 - 3962030
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3961980 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 3962030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 20010161 - 20010111
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  20010161 agcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgac 20010111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 24394973 - 24395023
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24394973 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 24395023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 34482836 - 34482886
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  34482836 agcaatgctatatatcaagaaagattttattaagaaaattttaagaatgac 34482886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 35444559 - 35444609
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  35444559 agcaatgctatatattaagaaagattttttcaagaaaatttcaagaatgac 35444609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 25167914 - 25167864
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  25167914 agcaatgctatatatcaagaaagatttttttaagaaaattttaagaatgac 25167864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 37477144 - 37477094
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| ||||||||| || |||||||||    
T  37477144 agcaatgctatatatcaagaaagattttctcaagaaaaatttaagaatgac 37477094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 36790528 - 36790480
Alignment:
Q  179 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||||    
T  36790528 caatgctatatatcaagaaagtttttatcaagaaaaatttaagaatgac 36790480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 29737143 - 29737190
Alignment:
Q  180 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||| | |||||||||| |||||||||    
T  29737143 aatgctatatatcaagaaagatttttttaagaaaattttaagaatgac 29737190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 15238383 - 15238433
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||| | ||| ||||||||| ||||||||||||    
T  15238383 agcaatgctatatatcaagaaaaaatttctcaagaaaaattcaagaatgac 15238433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 18036979 - 18037029
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||| |||||||||||||||||||| ||||||||| || |||||||||    
T  18036979 agcaatgatatatatcaagaaagattttttcaagaaaaatttaagaatgac 18037029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 28675149 - 28675199
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28675149 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 28675199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 33695391 - 33695341
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33695391 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 33695341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 33696697 - 33696747
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33696697 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 33696747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 6127276 - 6127326
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6127276 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 6127326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 17176085 - 17176035
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17176085 agcaatgctatatatcaagaaagattttatcaataaaatttcaagaatgac 17176035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 17705529 - 17705479
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17705529 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 17705479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 18365637 - 18365587
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18365637 agcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgac 18365587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 18370901 - 18370851
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18370901 agcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgac 18370851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 23291148 - 23291098
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23291148 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 23291098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 25986931 - 25986981
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25986931 agcaatgctatatatcaagaaagattttattaagaaaatttcaagaatgac 25986981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 18889760 - 18889711
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18889760 agcaatgctatatatcaagaaaga-tttatcaagaaaatttcaagaatgac 18889711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 6031805 - 6031755
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  6031805 agcaatgctatatatcaagaaagatttcatcaataaaattttaagaatgac 6031755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 11548647 - 11548602
Alignment:
Q  182 tgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  11548647 tgctatatatcaagaaaaattttctcaagaaaaattcaagaatgac 11548602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 8515787 - 8515755
Alignment:
Q  179 caatgctatatatcaagaaagattttatcaaga 211  Q
    |||||||||||||||||||||||||||||||||    
T  8515787 caatgctatatatcaagaaagattttatcaaga 8515755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 32702216 - 32702255
Alignment:
Q  187 tatatcaagaaagattttatcaagaaaatttcaagaatga 226  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  32702216 tatatcaagaaagattttttcatgaaaatttcaagaatga 32702255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 2309487 - 2309455
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaa 209  Q
    ||||||| |||||||||||||||||||||||||    
T  2309487 agcaatgttatatatcaagaaagattttatcaa 2309455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 10442853 - 10442803
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10442853 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 10442803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 22199262 - 22199312
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22199262 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 22199312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 31078883 - 31078833
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31078883 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 31078833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 36072948 - 36072998
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36072948 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 36072998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 49387952 - 49387902
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49387952 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 49387902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 2624838 - 2624887
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2624838 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 2624887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 4751447 - 4751497
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4751447 agcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgac 4751497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 7745176 - 7745126
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7745176 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 7745126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 21802386 - 21802336
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21802386 agcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgac 21802336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 24128240 - 24128290
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24128240 agcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 24128290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 33530752 - 33530702
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33530752 agcaatgctatatatcaagaaagattttatcaagaaaaattcaagaatgac 33530702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 47290067 - 47290117
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47290067 agcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 47290117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 36073354 - 36073401
Alignment:
Q  180 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36073354 aatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 36073401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 24392668 - 24392718
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  24392668 agcaatgctatatatcaagaaagattttctcaagaaaaattcaagaatgac 24392718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 44893427 - 44893477
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  44893427 agcaatgctatatatcaagaaagattttttcaaaaaaatttcaagaatgac 44893477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 46441845 - 46441895
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  46441845 agcaatgctatatatcaagaaagatttttttaagaaaatttcaagaatgac 46441895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 53123031 - 53123082
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatc-aagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  53123031 agcaatgctatatatcaagaaagattttttcaaagaaaatttcaagaatgac 53123082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 23964529 - 23964479
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||| ||||||||||||||||||||||||| ||||||| |||||||||    
T  23964529 agcaatgttatatatcaagaaagattttatcaaaaaaattttaagaatgac 23964479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 37935005 - 37934955
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||| |||||||||||||| ||||| |||||||||||    
T  37935005 agcaatgctatatatcaaaaaagattttatcaaaaaaatgtcaagaatgac 37934955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 50156642 - 50156592
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||| |||||||||||| |||||||||||| |||||||||    
T  50156642 agcaatgctatatattaagaaagattttttcaagaaaattttaagaatgac 50156592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 25063373 - 25063420
Alignment:
Q  180 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||| |||||||||| |||||||||||||||  ||||||||||||    
T  25063373 aatgctagatatcaagaatgattttatcaagaaagattcaagaatgac 25063420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 44893278 - 44893227
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatc-aagaaaatttcaagaatgac 227  Q
    ||||||||||||||| |||||||||||| || || |||||||||||||||||    
T  44893278 agcaatgctatatattaagaaagattttttcaaaaaaaatttcaagaatgac 44893227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 42671675 - 42671720
Alignment:
Q  182 tgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||| |||||||||||||| |||| || |||||||||    
T  42671675 tgctatatatcaataaagattttatcaaaaaaaatttaagaatgac 42671720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 6041885 - 6041935
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6041885 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 6041935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 2754718 - 2754768
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2754718 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 2754768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 3137478 - 3137428
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3137478 agcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 3137428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 3574591 - 3574541
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3574591 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 3574541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 11347269 - 11347319
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11347269 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 11347319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 37217117 - 37217067
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37217117 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 37217067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 42297354 - 42297404
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42297354 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 42297404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 3456065 - 3456114
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 226  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3456065 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatga 3456114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 34482974 - 34482925
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 226  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34482974 agcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatga 34482925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 48160906 - 48160955
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 226  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48160906 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatga 48160955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 33113794 - 33113841
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaat 224  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  33113794 agcaatgctatatatcaagaaagattttattaagaaaatttcaagaat 33113841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 30385012 - 30385062
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  30385012 agcaatgctatttatcaagaaagattttatcaagaaaatttcaaaaatgac 30385062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 8320648 - 8320599
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 226  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  8320648 agcaatgttatatatcaagaaagattttatcaagaaaattttaagaatga 8320599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 9797093 - 9797043
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||| |||||||||||||||||||| ||||||||| ||||||||||||    
T  9797093 agcaatgttatatatcaagaaagattttctcaagaaaaattcaagaatgac 9797043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 19650964 - 19650914
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  19650964 agcaatgttatatattaagaaagattttatcaagaaaattttaagaatgac 19650914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 37522054 - 37522104
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||| ||||||||||||||||||||| |||||||||||| |||||||||    
T  37522054 agcaatactatatatcaagaaagattttttcaagaaaattttaagaatgac 37522104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 42921154 - 42921194
Alignment:
Q  187 tatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  42921154 tatatcaagaaagattttatcaagaaaattttaagaatgac 42921194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 24343548 - 24343591
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaa 220  Q
    ||||||||||||||| |||||||||||||||||||||| |||||    
T  24343548 agcaatgctatatattaagaaagattttatcaagaaaaattcaa 24343591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 22426408 - 22426358
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||| ||||||| ||||||||||||||||||||||||| || ||||||    
T  22426408 agcaatgttatatattaagaaagattttatcaagaaaattttaaaaatgac 22426358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 33145714 - 33145763
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||| || ||||||| |||||||||    
T  33145714 agcaatgctatatatcaagaaagattttattaa-aaaattttaagaatgac 33145763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 36865091 - 36865041
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||| ||| |||||||||| |||||||||| |||||||||    
T  36865091 agcaatgctatatattaaggaagattttattaagaaaattttaagaatgac 36865041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 40327878 - 40327912
Alignment:
Q  179 caatgctatatatcaagaaagattttatcaagaaa 213  Q
    |||||||||||||||||||||||||||||||||||    
T  40327878 caatgctatatatcaagaaagattttatcaagaaa 40327912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 41224234 - 41224284
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||| |||||||||| |||||||||||| ||||||||| ||||||||||||    
T  41224234 agcactgctatatattaagaaagattttctcaagaaaaattcaagaatgac 41224284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 40328098 - 40328051
Alignment:
Q  180 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||| |||||||||| |||||||||||||||  ||||||||||||    
T  40328098 aatgctagatatcaagaatgattttatcaagaaagattcaagaatgac 40328051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 33839797 - 33839755
Alignment:
Q  185 tatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||| |||||||||||||||  ||||||||||||    
T  33839797 tatatatcaagaatgattttatcaagaaagattcaagaatgac 33839755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 207
Target Start/End: Complemental strand, 47402660 - 47402630
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatc 207  Q
    |||||||||||||||||||||||||||||||    
T  47402660 agcaatgctatatatcaagaaagattttatc 47402630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 47738117 - 47738155
Alignment:
Q  188 atatcaagaaagattttatcaagaaaatttcaagaatga 226  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  47738117 atatcaagaaagattttatcaagaaatattcaagaatga 47738155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 40214989 - 40215039
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40214989 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 40215039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 16045859 - 16045812
Alignment:
Q  180 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16045859 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 16045812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 9910357 - 9910307
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9910357 agcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 9910307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 18404443 - 18404493
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18404443 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 18404493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 44094699 - 44094749
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44094699 agcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgac 44094749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 19015405 - 19015454
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 226  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19015405 agcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatga 19015454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 36966772 - 36966723
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 226  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36966772 agcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatga 36966723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 37821898 - 37821849
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 226  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37821898 agcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatga 37821849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 25463677 - 25463727
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  25463677 agcaatgctatatatcaagaaagattttatgaagaaaattttaagaatgac 25463727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 25973415 - 25973465
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  25973415 agcaatgttatatatcaagaaagattttatcatgaaaatttcaagaatgac 25973465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 32000331 - 32000281
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  32000331 agcaatgctatatatcaagaaagattttctcaagaaaaattcaagaatgac 32000281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 3559620 - 3559668
Alignment:
Q  179 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  3559620 caatgctatatatcaagaaagattttatcaaaaaaattttaagaatgac 3559668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 6883488 - 6883538
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||||||||    
T  6883488 agcaatgctatatattaagaaagatttttttaagaaaatttcaagaatgac 6883538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 40273703 - 40273753
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  40273703 agcaatgctagatatcaagaaagattttttcaagaaaaattcaagaatgac 40273753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 41876506 - 41876456
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| |||| ||||||| |||||||||    
T  41876506 agcaatgctatatatcaagaaagattttttcaaaaaaattttaagaatgac 41876456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 34519759 - 34519795
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaa 213  Q
    |||||||||||||||||||||||||||||| ||||||    
T  34519759 agcaatgctatatatcaagaaagattttattaagaaa 34519795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 51620981 - 51621017
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaa 213  Q
    |||||||||||||||||||||||||||||| ||||||    
T  51620981 agcaatgctatatatcaagaaagattttattaagaaa 51621017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 27523054 - 27523098
Alignment:
Q  180 aatgctatatatcaagaaagattttatcaagaaaatttcaagaat 224  Q
    |||| ||||||||||||| |||||||||||||||  |||||||||    
T  27523054 aatgttatatatcaagaatgattttatcaagaaagattcaagaat 27523098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 52329320 - 52329356
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaa 213  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  52329320 agcaatgttatatatcaagaaagaatttatcaagaaa 52329356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 21936082 - 21936131
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21936082 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 21936131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 7475572 - 7475522
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7475572 agcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 7475522  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 9293640 - 9293590
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9293640 agcaatgctatatatcaagaaagattttatcaagaaattttcaagaatgac 9293590  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 10661888 - 10661938
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10661888 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 10661938  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 23268126 - 23268076
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23268126 agcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 23268076  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 35160758 - 35160808
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35160758 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 35160808  T

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Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 13354847 - 13354896
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13354847 agcaatgttatatatcaagaaagattttatcaagaaaatttcaagaatga 13354896  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 33380208 - 33380258
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  33380208 agcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgac 33380258  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 31174896 - 31174848
Alignment:
Q  179 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  31174896 caatgttatatatcaagaaagattttattaagaaaatttcaagaatgac 31174848  T

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Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 14941430 - 14941380
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||| ||||||  ||||||||||||    
T  14941430 agcaatgctatatatcaagaaagattttattaagaaagattcaagaatgac 14941380  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 43330913 - 43330963
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| |||| |||| ||||||||||||    
T  43330913 agcaatgctatatatcaagaaagattttctcaaaaaaaattcaagaatgac 43330963  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 21393751 - 21393702
Alignment:
Q  178 gcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||| ||||| ||||||||| || |||||||||    
T  21393751 gcaatgctatatatcaagaaaaattttctcaagaaaaatttaagaatgac 21393702  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 22592979 - 22592932
Alignment:
Q  180 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||| |||||||||| |||||||||||||||  ||||||||||||    
T  22592979 aatgctagatatcaagaatgattttatcaagaaagattcaagaatgac 22592932  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 9723406 - 9723456
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||| |||||||||||||| ||||||  || |||||||||    
T  9723406 agcaatgctatatattaagaaagattttattaagaaagatttaagaatgac 9723456  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 27847633 - 27847683
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||| ||||| |||||||||||||| ||||||  ||||||||||||    
T  27847633 agcaatgctgtatataaagaaagattttattaagaaagattcaagaatgac 27847683  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 40262748 - 40262714
Alignment:
Q  179 caatgctatatatcaagaaagattttatcaagaaa 213  Q
    ||||| |||||||||||||||||||||||||||||    
T  40262748 caatgttatatatcaagaaagattttatcaagaaa 40262714  T

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Target: scaffold0471 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 12843 - 12893
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12843 agcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 12893  T

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Target: scaffold0096 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 41012 - 41062
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41012 agcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgac 41062  T

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Target: scaffold0085 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 47851 - 47901
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47851 agcaatgctatttatcaagaaagattttatcaagaaaatttcaagaatgac 47901  T

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Target: scaffold0665 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 3068 - 3119
Alignment:
Q  176 cagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  3068 cagcaatgctatatatcaagaaagattttatcaataaaattttaagaatgac 3119  T

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Target: scaffold0204 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 4397 - 4447
Alignment:
Q  177 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  4397 agcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgac 4447  T

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Target: scaffold0228 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 8413 - 8453
Alignment:
Q  187 tatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8413 tatatcaagaaagattttatcaagaaaatttcaagaatgac 8453  T

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Target: scaffold0228; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 15995 - 16035
Alignment:
Q  187 tatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15995 tatatcaagaaagattttatcaagaaaatttcaagaatgac 16035  T

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Target: scaffold0228; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 25947 - 25987
Alignment:
Q  187 tatatcaagaaagattttatcaagaaaatttcaagaatgac 227  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25947 tatatcaagaaagattttatcaagaaaatttcaagaatgac 25987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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