View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15052_high_1 (Length: 445)
Name: NF15052_high_1
Description: NF15052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15052_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 427
Target Start/End: Complemental strand, 32823092 - 32822681
Alignment:
| Q |
13 |
agcaaaggaagattgaagtgcggcgtagattctattccagaacttgcactgctcggggacattcacaaacctcgtagcttccatcatctctcgagagtac |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32823092 |
agcaaaggaagattgaagtgcggcgtagattctattccagaatttgcactgctcggggacattcacaaacctcgtagcttccatcacctctcgagagtac |
32822993 |
T |
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| Q |
113 |
ttcttcttcttgttctccctctcactctcatcgctgtttgcggctgcaacaagctcctcagtgacagctaaaggaagggtgttcttgtgaatcttcttgg |
212 |
Q |
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||||||||||| | ||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32822992 |
ttcttcttctt---ccccctctcactctcatcgctgttttccgctgcaacaagctcctcagtgacagttaaaggaagggtgttcttgtgaatcttcttgg |
32822896 |
T |
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| Q |
213 |
aagcccttctatttgattgttttcggttcacgggaaagctattgagcaaaatagtttcgtcaatgatctcaatctttggaattccaaaccctaagaagtt |
312 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32822895 |
aagcccttctatttgattgttttcggttcacaggaaagctatcgagcaaaatagtttcgtcaatgatctcaatctttggaattccaaaccctaagaagtt |
32822796 |
T |
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| Q |
313 |
aggatttttcaacaaagcagatttgagttcttccaagaggtgcttcttcttgccttcgagttgttccttagggttagggttttgttgattagcagcatca |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32822795 |
aggatttttcaacaaagcagatttgagttcttccaagaggtgcttcttcttgccttggagttgttccttagggttagggttttgttgattagcagcatca |
32822696 |
T |
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| Q |
413 |
agagacttgcggtgt |
427 |
Q |
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| T |
32822695 |
agcaacttgcggtgt |
32822681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 52721780 - 52721673
Alignment:
| Q |
13 |
agcaaaggaagattgaagtgcggcgtagattctattccagaacttgcactgctcggggacattcacaaacctcgtagcttccatcatctctcgagagtac |
112 |
Q |
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|||||| | ||||||||| |||| ||||||| | |||||||| ||| ||||| | |||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
52721780 |
agcaaaagcagattgaagcgcggtgtagattgttttccagaatttgagctgctgagagacattcacaaacctcatagactccatcatctctcgagagtac |
52721681 |
T |
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| Q |
113 |
ttcttctt |
120 |
Q |
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|||||||| |
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| T |
52721680 |
ttcttctt |
52721673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 377
Target Start/End: Complemental strand, 52721497 - 52721446
Alignment:
| Q |
326 |
aaagcagatttgagttcttccaagaggtgcttcttcttgccttcgagttgtt |
377 |
Q |
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|||||||||| ||||||||||||||| | |||||||||||||||||||||| |
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| T |
52721497 |
aaagcagattcgagttcttccaagagacgtttcttcttgccttcgagttgtt |
52721446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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