View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15052_high_5 (Length: 221)
Name: NF15052_high_5
Description: NF15052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15052_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 41294618 - 41294449
Alignment:
| Q |
20 |
taaatttattatatctcataatttctaagaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttca |
119 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41294618 |
taaatttattatatctcataatttttaggaaaatgcttgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttca |
41294519 |
T |
|
| Q |
120 |
aaatccaacaagctagattaaatttctataaagaatataggagtaactaccatctgccaacacttctcag |
189 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41294518 |
aaacccaacaagctagattaaatttctataaagaatataggagtaactaccatctgccaacatttctcag |
41294449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 7755507 - 7755648
Alignment:
| Q |
48 |
gaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttcta |
147 |
Q |
| |
|
||||||| || |||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
7755507 |
gaaaatgcttaatgttacgagacacggtattgtacgaatttatacgaatagtaactattcattttatttttaaaacccaacaagctagattaaatttcta |
7755606 |
T |
|
| Q |
148 |
taaagaatataggagtaactaccatctgccaacacttctcag |
189 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7755607 |
taaagtatataggagtaactaccatctgccaacacttctcag |
7755648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 4086182 - 4086298
Alignment:
| Q |
73 |
agtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttctataaagaatataggagtaactaccat |
172 |
Q |
| |
|
||||||||| |||||| |||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||| || |||||| ||||| |
|
|
| T |
4086182 |
agtcttgcataaatttagacgaatggtaattattcattttattttcaaaacccaacaagctagattaaatttctatagagtatacagcagtaaccaccat |
4086281 |
T |
|
| Q |
173 |
ctgccaacacttctcag |
189 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4086282 |
ctgccaacacttctcag |
4086298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 26153224 - 26153320
Alignment:
| Q |
48 |
gaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttct |
146 |
Q |
| |
|
||||||| || ||||||||| |||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26153224 |
gaaaatgcttaatgttacga--cacaatcttgcacgaatttagacgaatggtaactattcattttattttcaaaatccaacaagctagattaaatttct |
26153320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 2210435 - 2210353
Alignment:
| Q |
68 |
gacacagtcttgcacgaatttatacgaatag-taactattcattttattttcaaaatccaacaagctagattaaatttctata |
149 |
Q |
| |
|
|||| ||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2210435 |
gacatagtcttgcacgaatttagacgaatgggtaactattcattttattttcaaaatccaacaagctagattaaatttctata |
2210353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 43471012 - 43470872
Alignment:
| Q |
48 |
gaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttcta |
147 |
Q |
| |
|
||||||| || ||||||||| || |||||||||| |||||| |||||| || |||||| ||||||||| |||| || |||||||||||||||||||| |
|
|
| T |
43471012 |
gaaaatgcttaatgttacga--cagagtcttgcacaaatttagacgaatggtgactatttattttatttgtaaaacacagcaagctagattaaatttcta |
43470915 |
T |
|
| Q |
148 |
taaagaata-taggagtaactaccatctgccaacacttctcag |
189 |
Q |
| |
|
||||| ||| || |||||| |||||||||||||||||||||| |
|
|
| T |
43470914 |
taaagtatacaagtagtaaccaccatctgccaacacttctcag |
43470872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University