View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15052_low_3 (Length: 279)
Name: NF15052_low_3
Description: NF15052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15052_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 27929491 - 27929233
Alignment:
| Q |
1 |
ccacgaagagctccagataatgaagtaaaaagaggccacaatcaaatgagttttcctgctgtggtacctgtcaaggacattcaatcacaacattagtaaa |
100 |
Q |
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| T |
27929491 |
ccacgaagagctccagataatgaagcaaaaagaggccacaatcaaatgagttttcctgctgtggtatctgtcaaggacattcaatcacaacattagtaaa |
27929392 |
T |
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| Q |
101 |
aacacaatgaaatggagaaaatagaaagttgttcgatgataactcaattaatcatcagccagagataggcgagaaataaattcaaaaagcgacaaagttt |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27929391 |
aacacaatgaattggagaaaatagaaagttgttcgatgataactcaactaatcatcagccagagataggcgagaaataaattcaaaaagcgacaaagttt |
27929292 |
T |
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| Q |
201 |
aggccaattaacgggacttgcaaaaagaaaacaattgagcaaaaataaatgtttaaaga |
259 |
Q |
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| T |
27929291 |
aggccaaataacgggacttgcaaaaagaaaacaattgagcaaaaataaatgtttaaaga |
27929233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 28082346 - 28082604
Alignment:
| Q |
1 |
ccacgaagagctccagataatgaagtaaaaagaggccacaatcaaatgagttttcctgctgtggtacctgtcaaggacattcaatcacaacattagtaaa |
100 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28082346 |
ccacgaagagctctagataatgaagcaaaaagaggccacaatcaaatgagttttcctgctgtggtacctgtcaaggacattcagtcacaacattagtaaa |
28082445 |
T |
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| Q |
101 |
aacacaatgaaatggagaaaatagaaagttgttcgatgataactcaattaatcatcagccagagataggcgagaaataaattcaaaaagcgacaaagttt |
200 |
Q |
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| T |
28082446 |
agcacaatcaaatggagaaaatagaaagttgttcgatgataactcaactaatcatcagccagagataggcgagaaataaattcaaaaagcgacaaagttt |
28082545 |
T |
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| Q |
201 |
aggccaattaacgggacttgcaaaaagaaaacaattgagcaaaaataaatgtttaaaga |
259 |
Q |
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| T |
28082546 |
aggccaaataatgggacttgcaaaaagaaaacaattgagcaaaaagaaatgtttaaaga |
28082604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 5 - 188
Target Start/End: Complemental strand, 27935518 - 27935335
Alignment:
| Q |
5 |
gaagagctccagataatgaagtaaaaagaggccacaatcaaatgagttttcctgctgtggtacctgtcaaggacattcaatcacaacattagtaaaaaca |
104 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
27935518 |
gaagcgctctagataatgaagtaaaaagaggccacaatcaaatttgttttcctgctgtggtacctgtcaaggacattcagtcacaacattagtaaaagca |
27935419 |
T |
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| Q |
105 |
caatgaaatggagaaaatagaaagttgttcgatgataactcaattaatcatcagccagagataggcgagaaataaattcaaaaa |
188 |
Q |
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| T |
27935418 |
caatcaaatggagaaaatagaaagttgttcgatgataactcaactaatcatcagccagagataggagaggaataaattcaaaaa |
27935335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 46163502 - 46163458
Alignment:
| Q |
29 |
aaagaggccacaatcaaatgagttttcctgctgtggtacctgtca |
73 |
Q |
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| T |
46163502 |
aaagaggccacaatcatatgagttttcttgctgtggcaactgtca |
46163458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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