View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15052_low_4 (Length: 272)
Name: NF15052_low_4
Description: NF15052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15052_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 14812594 - 14812852
Alignment:
| Q |
1 |
gtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaagttaata |
100 |
Q |
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| T |
14812594 |
gtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaagttaata |
14812693 |
T |
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| Q |
101 |
atgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttcatgtccaaaagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812694 |
atgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttcatgtccaaaagtt |
14812793 |
T |
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| Q |
201 |
cttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812794 |
cttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
14812852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 15259589 - 15259847
Alignment:
| Q |
1 |
gtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaagttaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259589 |
gtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaagttaata |
15259688 |
T |
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| Q |
101 |
atgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttcatgtccaaaagtt |
200 |
Q |
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| T |
15259689 |
atgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttcatgtccaaaagtt |
15259788 |
T |
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| Q |
201 |
cttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259789 |
cttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
15259847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 17521586 - 17521328
Alignment:
| Q |
1 |
gtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaagttaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521586 |
gtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaagttaata |
17521487 |
T |
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| Q |
101 |
atgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttcatgtccaaaagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521486 |
atgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttcatgtccaaaagtt |
17521387 |
T |
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| Q |
201 |
cttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521386 |
cttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
17521328 |
T |
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