View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15052_low_8 (Length: 219)
Name: NF15052_low_8
Description: NF15052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15052_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 26497564 - 26497368
Alignment:
| Q |
13 |
attattctaatatgtggaatagaaaaatgttaatttgttgttaataagggccaacaacatccattatgtgaatttaggcattatg--------cctcttg |
104 |
Q |
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| T |
26497564 |
attattataatatgtggtata-aaaaatgttaatttgttgttaataagggccaacaacatccattatgtgaatttaggcattatggcattatgcctcttg |
26497466 |
T |
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| Q |
105 |
catggcttagctagaaaatcatcacaattattttcttctcatagagactaaacaatacaaacatgtcaatcttattgaagaagattcttgaatgaaac |
202 |
Q |
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| T |
26497465 |
catggcttagctagaaaatcatcacaattatttttttctcatagagactaaacaatacaaacatgtcaatcttattgaagaagattcttgaatgaaac |
26497368 |
T |
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