View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15053_high_10 (Length: 417)
Name: NF15053_high_10
Description: NF15053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15053_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 408
Target Start/End: Complemental strand, 11754208 - 11753817
Alignment:
| Q |
17 |
agaaagaatatccaattgcacttccaagtgtagaaagcagcatgtacgccacagatgaatttcgcatgtattcgtttaaggttcttctttgtcctcgtgc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11754208 |
agaaagaatatccaattgcacttccaagtgtagaaagcagcatgtacgccacagatgaatttcgcatgtattcgtttaaggttcttctttgtcctcgtgc |
11754109 |
T |
|
| Q |
117 |
atactctcatgattggagcgagtgtccttttaaacatcctcatgagaatgctcgaaggagagaccttagaaagttcacctacagctgtgtgccatgccct |
216 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11754108 |
atactctcatgattggaccgagtgtccttttaaacatcctcatgagaatgctcgaaggagagaccttagaaagttcacctacagctgtgtaccatgccct |
11754009 |
T |
|
| Q |
217 |
gattttaaaaaaggggactgcaaacgtgcagatatgtgtgaatttgctcatggactattcgagacatggctacacccagatcggtatcgcacaattctct |
316 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11754008 |
gattttaaaaaaggggactgcaaacgtgcagatacgtgtgaatttgctcatggactattcgagacatggctacacccagatcggtatcgcacaattctct |
11753909 |
T |
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| Q |
317 |
gcaaagatggtactagttgtgaccgaaaggtgtgcttttttgcacacttagctaaagagctgcgtccaatatatgtgtccacaggttctgct |
408 |
Q |
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| T |
11753908 |
gcaaagatggtactagttgtgaccgaaaggtgtgcttttttgcacacttagctgaagagctgcgtccaatatatgtctccactggatctgct |
11753817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 54 - 384
Target Start/End: Complemental strand, 11688512 - 11688182
Alignment:
| Q |
54 |
cagcatgtacgccacagatgaatttcgcatgtattcgtttaaggttcttctttgtcctcgtgcatactctcatgattggagcgagtgtccttttaaacat |
153 |
Q |
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| T |
11688512 |
cagcatatatgccacagatgaatttcgcatgtattcggtcaaggtccttctttgtcatcgtgcatacactcataattggaccgagtgtcctttttaccat |
11688413 |
T |
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| Q |
154 |
cctcatgagaatgctcgaaggagagaccttagaaagttcacctacagctgtgtgccatgccctgattttaaaaaaggggactgcaaacgtgcagatatgt |
253 |
Q |
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||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||| ||||||| |
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| T |
11688412 |
cctaatgagaatgcacgaaggagagaccctagaaagttcacctacagctgtgtgccatgcgctgattttaaaactagggattgcaaacgtggtgatatgt |
11688313 |
T |
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| Q |
254 |
gtgaatttgctcatggactattcgagacatggctacacccagatcggtatcgcacaattctctgcaaagatggtactagttgtgaccgaaaggtgtgctt |
353 |
Q |
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| T |
11688312 |
gtgaatatgctcatggagtattcgagacctggctacatccagatcagtatcgcacaaggctctgcaaagagggtactaattgtaaccgaaaggtgtgctt |
11688213 |
T |
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| Q |
354 |
ttttgcacacttagctaaagagctgcgtcca |
384 |
Q |
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||||||||| | ||| |||||||||||||| |
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| T |
11688212 |
ttttgcacatgttgctgaagagctgcgtcca |
11688182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 54 - 408
Target Start/End: Complemental strand, 9314894 - 9314540
Alignment:
| Q |
54 |
cagcatgtacgccacagatgaatttcgcatgtattcgtttaaggttcttctttgtcctcgtgcatactctcatgattggagcgagtgtccttttaaacat |
153 |
Q |
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||||||||| |||||||||||||| ||||||||||| || ||||||| || |||| |||||||||||||||||||||||| |||||||||||| ||| |
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| T |
9314894 |
cagcatgtatgccacagatgaattccgcatgtattcattcaaggttcgtccttgttctcgtgcatactctcatgattggactgagtgtccttttgtgcat |
9314795 |
T |
|
| Q |
154 |
cctcatgagaatgctcgaaggagagaccttagaaagttcacctacagctgtgtgccatgccctgattttaaaaaaggggactgcaaacgtgcagatatgt |
253 |
Q |
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||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |||| | ||||||| |
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| T |
9314794 |
cctggagagaatgctcgaaggagagaccctagaaagtttcactacagctgtgtgccatgccctgattttaggaaaggggcttgccgacgttcggatatgt |
9314695 |
T |
|
| Q |
254 |
gtgaatttgctcatggactattcgagacatggctacacccagatcggtatcgcacaattctctgcaaagatggtactagttgtgaccgaaaggtgtgctt |
353 |
Q |
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|||||| |||||||||| |||||||| ||||||||||||| || |||||| |||| || |||||||| |||| ||||| |||||| ||||||||| |
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| T |
9314694 |
gtgaatatgctcatggagtattcgagtgctggctacacccagctcagtatcggacaaggctgtgcaaagacggtatgggttgtaaccgaagggtgtgctt |
9314595 |
T |
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| Q |
354 |
ttttgcacacttagctaaagagctgcgtccaatatatgtgtccacaggttctgct |
408 |
Q |
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|| || |||| | || ||||||||||||| | ||||||||||| ||||||||| |
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| T |
9314594 |
cttcgctcactcacctgaagagctgcgtccgctgtatgtgtccactggttctgct |
9314540 |
T |
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