View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15053_high_15 (Length: 354)
Name: NF15053_high_15
Description: NF15053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15053_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 23786433 - 23786345
Alignment:
| Q |
10 |
ataatactgagaaggatgacgaaacaaaacgaggaatcttgttcttgttgttggtgggaataatagaagaaacagcagcagcaccagca |
98 |
Q |
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| T |
23786433 |
ataatactgagaaggatgacgaaacaaaacgaggaatcttgttcttgttgttggtgggaataatagaacaaacagcagcagcagcagca |
23786345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 23786328 - 23786282
Alignment:
| Q |
97 |
caccaccaccaccatatgatcttcttaaaattgaaaacattgttgca |
143 |
Q |
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| T |
23786328 |
caccaccaccaccatataatcttcttaaaattgaaaacattgttgca |
23786282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 24621923 - 24621983
Alignment:
| Q |
187 |
agggaaccagcgatcttatttatatctagggataagaaggttaaacaaatttactaacttatttat |
252 |
Q |
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| T |
24621923 |
agggaaccagcgatcttatttatatctagg-----gagggttaaacaaatttactaacttatttat |
24621983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 302
Target Start/End: Original strand, 44722759 - 44722800
Alignment:
| Q |
261 |
ctaggatgaggtagctaataggtccctcactagtgagggagt |
302 |
Q |
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| T |
44722759 |
ctaggatgaggtagctaataggtccctcaccagtgagggagt |
44722800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 290
Target Start/End: Complemental strand, 5527951 - 5527916
Alignment:
| Q |
255 |
tgacggctaggatgaggtagctaataggtccctcac |
290 |
Q |
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| T |
5527951 |
tgacggctaggatgaggtagctaataggtccctcac |
5527916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 23876722 - 23876812
Alignment:
| Q |
249 |
ttatggtgacggctaggatgaggtagctaataggtccctcactagtgagggagt--nnnnnnncattggattagatatgtggtccagatta |
337 |
Q |
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| T |
23876722 |
ttatggtggcggctaggatgaggtagttgataggtccctcactggtgaggtagtaaaaaataccattggattagatatgtggtctagatta |
23876812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 7420 - 7386
Alignment:
| Q |
257 |
acggctaggatgaggtagctaataggtccctcact |
291 |
Q |
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| T |
7420 |
acggctaggatgaggtagctaataggtctctcact |
7386 |
T |
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