View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15053_high_17 (Length: 335)

Name: NF15053_high_17

Description: NF15053

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15053_high_17

[»] chr4 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 79; E-Value: 7e-37

Query Start/End: Original strand, 157 - 247

Target Start/End: Complemental strand, 3420301 - 3420211

Alignment:

Q	157	gttcctaatagtctttcatttgttgcaaagaaagattaaatttaaaagcatattcatgatattcagatattgtatgcatgcgtcttcctaa	247	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	3420301	gttcctaatagtctttcatttgtttcaaagaaagatcaaatttaaaagcatattcatgatattcagatattgtatgcatgtgtcttcctaa	3420211	T

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Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 72; E-Value: 1e-32

Query Start/End: Original strand, 177 - 319

Target Start/End: Original strand, 43372941 - 43373084

Alignment:

Q	177	tgttgcaaagaaagattaaatt-taaaagcatattcatgatattcagatattgtatgcatgcgtcttcctaatacgtttatgaaattgtaggcattggta	275	Q
		\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	43372941	tgtttcaaagaatgattacattctaaaatcatattcttgatattcagatattgtatgcacacttcttcctaatacatttatgaaattgcaggcattggta	43373040	T

Q	276	atcattgagcagtctttttattttccttactgaagtattacttt	319	Q
		\|\|\| \|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|
T	43373041	atctttcagcggtctttttatttcccttacttatgtattacttt	43373084	T

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