View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15053_high_21 (Length: 249)

Name: NF15053_high_21
Description: NF15053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15053_high_21
NF15053_high_21
[»] scaffold0570 (1 HSPs)
scaffold0570 (1-203)||(10073-10275)
[»] scaffold0201 (1 HSPs)
scaffold0201 (1-217)||(13051-13267)
[»] chr3 (10 HSPs)
chr3 (1-154)||(23448846-23448999)
chr3 (1-154)||(23500609-23500762)
chr3 (6-217)||(23480233-23480444)
chr3 (2-209)||(23464942-23465149)
chr3 (2-209)||(23406288-23406495)
chr3 (41-154)||(23353459-23353572)
chr3 (2-153)||(23441455-23441606)
chr3 (2-153)||(23473987-23474138)
chr3 (2-55)||(23455668-23455721)
chr3 (102-155)||(13805986-13806039)
[»] chr1 (2 HSPs)
chr1 (99-153)||(45301895-45301949)
chr1 (105-153)||(11210948-11210996)
[»] chr8 (1 HSPs)
chr8 (109-158)||(39425066-39425115)
[»] chr2 (2 HSPs)
chr2 (99-135)||(12979147-12979183)
chr2 (99-151)||(17511349-17511400)


Alignment Details
Target: scaffold0570 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 10073 - 10275
Alignment:
Q  1 taaatcaataaactatatcctatgatttgcaagttttgttttctaatatagcacaatttcctactacacaagtttt-tcatctccatattcgtgattgga 99  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||    
T  10073 taaatcaataagctatatcctatgatttgcaagttt-gttttctaatatagcacaatttcttactacacaagttttttcatctccatatttgtgattgga 10171  T
Q  100 aatgaacataaattttagaaaatgaaagctaaaaatatttttagaaagtaaacaagcccaattatttggagaagtgaacaatgatgttgacatgccttgc 199  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||  ||||| ||    
T  10172 aatgaacataaattttagaaaatgaaagctaaaaataattttagaaagtaaacaggcccaattatttggagaagtaaacaatgatgttgatgtgcctggc 10271  T
Q  200 cata 203  Q
    ||||    
T  10272 cata 10275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 13267 - 13051
Alignment:
Q  1 taaatcaataaactatatcctatgatttgcaagttttgttttctaatatagcacaatttcctactacacaagtttttcatctccatattcgtgattggaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||   |||||||  ||| |||||||||| ||||| || ||||||    
T  13267 taaatcaataaactatatcctatgatttgcaagttttgttttttaacatagcacaattatttactacatgagtctttcatctccttattcatggttggaa 13168  T
Q  101 atgaacataaattttagaaaatgaaagctaaaaatatttttagaaagtaaacaagcccaattatttggagaagtgaacaatgatgttgacatgccttgcc 200  Q
    ||||||||| |||||| |||||||||||||||| || |||||||||||||||| ||| ||||||||||||||||||||||||||||| |  ||||| |||    
T  13167 atgaacatagattttaaaaaatgaaagctaaaattaattttagaaagtaaacaggccgaattatttggagaagtgaacaatgatgtttatgtgcctggcc 13068  T
Q  201 atagttgatatgacctt 217  Q
    |||||||||||||||||    
T  13067 atagttgatatgacctt 13051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 23448999 - 23448846
Alignment:
Q  1 taaatcaataaactatatcctatgatttgcaagttttgttttctaatatagcacaatttcctactacacaagtttttcatctccatattcgtgattggaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||    
T  23448999 taaatcaataaactatatcctatgatttgcaagttttgttttctaatatagcacaattttttactacacaagtttttcatttccatattcgtgattggaa 23448900  T
Q  101 atgaacataaattttagaaaatgaaagctaaaaatatttttagaaagtaaacaa 154  Q
    |||||||||||||| |||||||||||||||| ||||  ||||||||||||||||    
T  23448899 atgaacataaatttgagaaaatgaaagctaataataactttagaaagtaaacaa 23448846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 23500762 - 23500609
Alignment:
Q  1 taaatcaataaactatatcctatgatttgcaagttttgttttctaatatagcacaatttcctactacacaagtttttcatctccatattcgtgattggaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  23500762 taaatcaataaactatatcctatgatttgcaagttttgttttctaatatagcacaattttttacaacacaagtttttcatctccatattcgtgattggaa 23500663  T
Q  101 atgaacataaattttagaaaatgaaagctaaaaatatttttagaaagtaaacaa 154  Q
    |||||||||||||| |||||||||||||||| ||||  ||||||||||||||||    
T  23500662 atgaacataaatttgagaaaatgaaagctaataataactttagaaagtaaacaa 23500609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 6 - 217
Target Start/End: Complemental strand, 23480444 - 23480233
Alignment:
Q  6 caataaactatatcctatgatttgcaagttttgttttctaatatagcacaatttcctactacacaagtttttcatctccatattcgtgattggaaatgaa 105  Q
    ||||||||||| |  ||| |||| || ||||||||||||||||||||||||||   |||||||  ||| |||||||||| ||||| || |||||||||||    
T  23480444 caataaactattttatataattttcatgttttgttttctaatatagcacaattatatactacatgagtctttcatctccttattcatggttggaaatgaa 23480345  T
Q  106 cataaattttagaaaatgaaagctaaaaatatttttagaaagtaaacaagcccaattatttggagaagtgaacaatgatgttgacatgccttgccatagt 205  Q
    |||| |||||| |||||||||||||||| || |||||||||||||||| ||| ||||||||||||||||||||||||||||| |  ||||| ||||||||    
T  23480344 catagattttaaaaaatgaaagctaaaattaattttagaaagtaaacaggccgaattatttggagaagtgaacaatgatgtttatgtgcctggccatagt 23480245  T
Q  206 tgatatgacctt 217  Q
    ||||||||||||    
T  23480244 tgatatgacctt 23480233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 23465149 - 23464942
Alignment:
Q  2 aaatcaataaactatatcctatgatttgcaagttttgttttctaatatagcacaatttcctactacacaagtttttcatctccatattcgtgattggaaa 101  Q
    ||||||||||||||| |||||| ||||| | ||||||||| ||||||||||||||||   |||| || |||| ||||||||||||||| ||  |||||||    
T  23465149 aaatcaataaactatttcctatcatttgaatgttttgttt-ctaatatagcacaattgtttacttcataagtctttcatctccatatttgtagttggaaa 23465051  T
Q  102 tgaacataaattttagaaaatgaaagctaaaaatatttttagaaagtaaa-caagcccaattatttggagaagtgaacaatgatgttgacatgccttgcc 200  Q
    ||||||||||||||||||| ||||  | ||| ||| |||||||||||||| || ||| |||||||| ||||||||||||||||  ||||  ||||| |||    
T  23465050 tgaacataaattttagaaattgaagacgaaatataattttagaaagtaaaccaggccaaattatttcgagaagtgaacaatgacattgatgtgcctggcc 23464951  T
Q  201 atagttgat 209  Q
    |||||||||    
T  23464950 atagttgat 23464942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 23406495 - 23406288
Alignment:
Q  2 aaatcaataaactatatcctatgatttgcaagttttgttttctaatatagcacaatttcctactacacaagtttttcatctccatattcgtgattggaaa 101  Q
    ||||||||||||||| |||||| ||||| | ||||||||| ||||||||||||||||   |||| || |||| ||||||||||||||| ||  |||||||    
T  23406495 aaatcaataaactatttcctatcatttgaatgttttgttt-ctaatatagcacaattatttacttcataagtctttcatctccatatttgtagttggaaa 23406397  T
Q  102 tgaacataaattttagaaaatgaaagctaaaaatatttttagaaagtaaa-caagcccaattatttggagaagtgaacaatgatgttgacatgccttgcc 200  Q
    |||||||||||||||||||  |||  | ||| ||| |||||||||||||| || ||| |||||||| ||||||||||||||||  ||||  ||||| |||    
T  23406396 tgaacataaattttagaaatcgaagacgaaatataattttagaaagtaaaccaggccaaattatttcgagaagtgaacaatgacattgatgtgcctggcc 23406297  T
Q  201 atagttgat 209  Q
    |||||||||    
T  23406296 atagttgat 23406288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 41 - 154
Target Start/End: Complemental strand, 23353572 - 23353459
Alignment:
Q  41 ttctaatatagcacaatttcctactacacaagtttttcatctccatattcgtgattggaaatgaacataaattttagaaaatgaaagctaaaaatatttt 140  Q
    |||||| | |||||||||   |||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||    
T  23353572 ttctaaaacagcacaattatttactacacaagtctttcatctccatattcgtgactggaaatgaacatagattttagaaaatgaaagcaaaaaataattt 23353473  T
Q  141 tagaaagtaaacaa 154  Q
    ||||||||||||||    
T  23353472 tagaaagtaaacaa 23353459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 23441606 - 23441455
Alignment:
Q  2 aaatcaataaactatatcctatgatttgcaagttttgttttctaatatagcacaatttcctactacacaagtttttcatctccatattcgtgattggaaa 101  Q
    |||| |||||||||| || ||| |||| || |||||||||||||||||||||||  |   |||||||  ||| |||||||||||||||| | ||||||||    
T  23441606 aaataaataaactatttcatatcatttacatgttttgttttctaatatagcacagctatttactacatgagtctttcatctccatattcttaattggaaa 23441507  T
Q  102 tgaacataaattttagaaaatgaaagctaaaaatatttttagaaagtaaaca 153  Q
    ||||||||||||||||||||  ||  ||||||||| |||| |||| ||||||    
T  23441506 tgaacataaattttagaaaacaaacactaaaaataatttttgaaaataaaca 23441455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 23474138 - 23473987
Alignment:
Q  2 aaatcaataaactatatcctatgatttgcaagttttgttttctaatatagcacaatttcctactacacaagtttttcatctccatattcgtgattggaaa 101  Q
    |||| |||||||||| || ||| |||| || |||||||||||||||||||||||  |   |||||||  ||| |||||||||||| ||| | ||||||||    
T  23474138 aaataaataaactatttcatatcatttacatgttttgttttctaatatagcacagctatttactacatgagtctttcatctccattttcttaattggaaa 23474039  T
Q  102 tgaacataaattttagaaaatgaaagctaaaaatatttttagaaagtaaaca 153  Q
    ||||||||||||||||||||  ||  ||||||||| |||| |||| ||||||    
T  23474038 tgaacataaattttagaaaacaaacactaaaaataatttttgaaaataaaca 23473987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 23455721 - 23455668
Alignment:
Q  2 aaatcaataaactatatcctatgatttgcaagttttgttttctaatatagcaca 55  Q
    ||||||||||||||| |||||| ||||||| ||||||| |||||||||||||||    
T  23455721 aaatcaataaactatttcctatcatttgcatgttttgtattctaatatagcaca 23455668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 13806039 - 13805986
Alignment:
Q  102 tgaacataaattttagaaaatgaaagctaaaaatatttttagaaagtaaacaag 155  Q
    |||||||||||||||||||||||||  | |||||  ||||||||||||||||||    
T  13806039 tgaacataaattttagaaaatgaaaattgaaaatgcttttagaaagtaaacaag 13805986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 45301895 - 45301949
Alignment:
Q  99 aaatgaacataaattttagaaaatgaaagctaaaaatatttttagaaagtaaaca 153  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||    
T  45301895 aaatgaacataaattttggaaaatgaaagctgaaaatgtttttagaaagtaaaca 45301949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 11210996 - 11210948
Alignment:
Q  105 acataaattttagaaaatgaaagctaaaaatatttttagaaagtaaaca 153  Q
    |||||||||||||||||| ||| || |||||||||| ||||||||||||    
T  11210996 acataaattttagaaaataaaaactgaaaatattttgagaaagtaaaca 11210948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 39425066 - 39425115
Alignment:
Q  109 aaattttagaaaatgaaagctaaaaatatttttagaaagtaaacaagccc 158  Q
    |||||||||||||||||| || |||||  ||||| |||||||||||||||    
T  39425066 aaattttagaaaatgaaaactgaaaatgattttaaaaagtaaacaagccc 39425115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 12979147 - 12979183
Alignment:
Q  99 aaatgaacataaattttagaaaatgaaagctaaaaat 135  Q
    |||||||||||||||||||||||||||| || |||||    
T  12979147 aaatgaacataaattttagaaaatgaaaactgaaaat 12979183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 17511349 - 17511400
Alignment:
Q  99 aaatgaacataaattttagaaaatgaaagctaaaaatatttttagaaagtaaa 151  Q
    |||||||||||||||| | ||||||||| || |||||||| ||||||||||||    
T  17511349 aaatgaacataaatttaa-aaaatgaaaacttaaaatattattagaaagtaaa 17511400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University