View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15053_high_5 (Length: 453)
Name: NF15053_high_5
Description: NF15053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15053_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 445
Target Start/End: Complemental strand, 37855934 - 37855509
Alignment:
| Q |
20 |
tatatgatatcctaagtgtgttgatgtgacatgattataaggtatatagatgaagttgggtgtgtgtgacattcttgaagaggggaaggcaatggctaat |
119 |
Q |
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| T |
37855934 |
tatatgatatcctaagtgtgttgatgtgacatgattataaggtttatagatgaagttgggtgtgtgtgacattcttgaagaggggaaggcaatggctaat |
37855835 |
T |
|
| Q |
120 |
cgtggagtttgggcatccatacaataacttattttgtgttgagggtttggatgacaatacttgtgaaacaaaactttcaaccccatatcacatgcatcat |
219 |
Q |
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| T |
37855834 |
cgtggagtttgggcatccatacaataaattattttgtgttgagggtttggatgacaatacttgtgaaacaaaactttcaaccccatatcacatgcatcat |
37855735 |
T |
|
| Q |
220 |
ttggtccctaacatcatgtgctagctttaagaaccttgtttttatgtcctttaagcacatattctctcaccatatcatctcacagtaagaaaaatctttg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37855734 |
ttggtccctaacatcatgtgctagctttaagaaccttgtttttatgtcctttaagcacatattctctcaccatatcatctcacagtaagaaaaatctttg |
37855635 |
T |
|
| Q |
320 |
gggcaatccgcatgtcccctannnnnnnnnnnnnnnnngtcacatgcaggtacaaatgctaatatctatctatatatataaaagatcatttaaaggagca |
419 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37855634 |
gggcaatccgcatgtcccctatttttattttttattttgtcacatgcaggtacaaatgctaatatctatctatatatataaaagatcatttaaaggagca |
37855535 |
T |
|
| Q |
420 |
agtagattttttgtttctcttcattt |
445 |
Q |
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|||||||||||||||||||||||||| |
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| T |
37855534 |
agtagattttttgtttctcttcattt |
37855509 |
T |
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