View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15053_high_8 (Length: 424)
Name: NF15053_high_8
Description: NF15053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15053_high_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 11 - 424
Target Start/End: Complemental strand, 51933960 - 51933547
Alignment:
| Q |
11 |
atactggctggtcagggggaaggtgtgaactctaacaatgcaactgcatatatggtagttttttcctcactaaaactaatttttcttccctgtaatttgg |
110 |
Q |
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| T |
51933960 |
atactggctggtcagggggaaggtgtgaactctaacaatgcaactgcatatatggtagttttttcctcactaaaactaatttttcttccctgtaatttgg |
51933861 |
T |
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| Q |
111 |
cagttatggatcaggcaatcggatcaagttagcgtacacgaggaaaatcattgatgccattcattctggcagtctcttgaatgcgaaatacattaaaact |
210 |
Q |
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| T |
51933860 |
cagttatggatcaggcaatcggatcaagttagcgtacacgaggaaaatcattgatgccattcattctggctgtctcttgaatgcgaaatacattaaaact |
51933761 |
T |
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| Q |
211 |
gaagtgtttgggcttgagatcccaacagcaatagatggagtcccatctgaaatcttggaccccataaacacggttagttaatacttaatattcagtatat |
310 |
Q |
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| T |
51933760 |
gaagtgtttgggcttgagatcccaacagcaatagatggagtcccatctgaaatcttggaccccataaacacggttagttaatacttaatattcagtatat |
51933661 |
T |
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| Q |
311 |
aagttttatacaactatatcacaatcttgaaggtatgaactgtacttgcatgaactgcagaggtttgaaaagaaggcctaccaacatccccttctgaaat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | |||||||||| |
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| T |
51933660 |
aagttttatacaactatatcacaatcttgaaggtatgaactgtacttgcatgaactgcagtggtttgaaaagaaggcctaccaagatacacttctgaaat |
51933561 |
T |
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| Q |
411 |
tagctggtctattc |
424 |
Q |
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| T |
51933560 |
tagctggtctattc |
51933547 |
T |
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