View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15053_high_9 (Length: 421)
Name: NF15053_high_9
Description: NF15053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15053_high_9 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 3 - 421
Target Start/End: Complemental strand, 38969365 - 38968954
Alignment:
| Q |
3 |
atcaattatagtagaattcttttcagtggctctccctgcccacggattagtcagcatatgactggataccacgtttaatcttgtgtcgtttttattatat |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38969365 |
atcaattatagtagaattcttttcagtggctcc----gcccatggattagtcagcacatggctggataccacgttaaatcttgtgtcgtttttattatac |
38969270 |
T |
|
| Q |
103 |
agtatcttttactattattgctattattctcgcatcatgttctaacacaaaagatagtgattaaggtgtcaatgaatttacgtccttataaggtagtatt |
202 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38969269 |
agtatcttttactattattgttattattctcgcatcctgttgtaacacaaaagatagtgattaaggtgtcaatgaatttacgtccttataaggcagtatt |
38969170 |
T |
|
| Q |
203 |
gaatggcaactgatacaagtgtttttattaattaaatgtgtatagtatcgaataattttgtactgccttatatgataactatgtcatttcaattgctatc |
302 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38969169 |
gaatggcaattgatacaagtgtttttattaattaaatgtgtatagtatcgaataattttgtactgccttat---ataactatgtcatttcaattgctatc |
38969073 |
T |
|
| Q |
303 |
cctaccaagaaaaagcacaacagcgttaaaaggagacatgatgtttttcttttgggtattcaaaatctataaagcttacttgtagtcgtgtgtgacatga |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38969072 |
cctaccaagaaaaagcacaacagcgttaaaaggagacatgatgtttttcttttgggtattcaaaatctataaagcttacttgtagtcttgtgtgacatga |
38968973 |
T |
|
| Q |
403 |
aattgattggtatggttta |
421 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
38968972 |
aattgattggtatggttta |
38968954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 22258478 - 22258598
Alignment:
| Q |
6 |
aattatagtagaattcttttcagtggctctccctgcccacggattagtcagcatatgactggataccacgtttaatcttgtgtcgtttttattatatagt |
105 |
Q |
| |
|
||||||||| |||||||||| ||||||||| || | |||||||||| || || |||||||||||||||||| |||||||||||| |||| | |
|
|
| T |
22258478 |
aattatagtggaattcttttaagtggctct----gctcgtggattagtcaacacattgctggataccacgtttaatgttgtgtcgttttcatta-----t |
22258568 |
T |
|
| Q |
106 |
atcttttactattattgctattattctcgc |
135 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
22258569 |
gtcttttactattattgtcattattctcgc |
22258598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 16910090 - 16909957
Alignment:
| Q |
7 |
attatagtagaattcttttcagtggctctccctgcccacggattagtcagcatatgactggataccacgtttaatcttgtgtcgttttt-attatatagt |
105 |
Q |
| |
|
|||||||| |||||||||||||| ||||| || || ||| ||||||||| || |||||||||||||| ||||||||||||||||| |||| | |
|
|
| T |
16910090 |
attatagt-gaattcttttcagtagctctacc----catggaatagtcagcacattgctggataccacgttaaatcttgtgtcgtttttcatta-----t |
16910001 |
T |
|
| Q |
106 |
atcttttactattattgctattattctcgcatcatgttctaaca |
149 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||| ||||| |
|
|
| T |
16910000 |
gtcttttactattattgtcattattctcgcgtcctgttataaca |
16909957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 12466083 - 12466178
Alignment:
| Q |
1 |
tcatcaattatagtagaattcttttcagtggctctccctgcccacggattagtcagcatatgactggataccacgtttaatcttgtgtcgtttttattat |
100 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||| |||| | ||||||||||| || ||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
12466083 |
tcattaattatagtggaattcttttcaatggctct----gcccgtgaattagtcagcacattgatggataccacgtttaatcttgtgccgttttcattat |
12466178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 25550214 - 25550242
Alignment:
| Q |
7 |
attatagtagaattcttttcagtggctct |
35 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25550214 |
attatagtagaattcttttcagtggctct |
25550242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 37965246 - 37965190
Alignment:
| Q |
38 |
ctgcccacggattagtcagcatatgactggataccacgtttaatcttgtgtcgtttt |
94 |
Q |
| |
|
||||||| |||||||||| | ||| ||||||||||||| |||||||||||||||| |
|
|
| T |
37965246 |
ctgcccatggattagtcaccttattgttggataccacgttaaatcttgtgtcgtttt |
37965190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University