View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15053_low_11 (Length: 414)
Name: NF15053_low_11
Description: NF15053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15053_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 41 - 401
Target Start/End: Original strand, 32217032 - 32217392
Alignment:
| Q |
41 |
ggaggtattataagatatatcttcagcacaccagcaatggcctgaactgaaatagttgtagagtctctcaattagccactctcagtgctttcttgatatc |
140 |
Q |
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| T |
32217032 |
ggaggtattataagatatatcttcagcacaccagcaatggcctgaactgaaatagttgtagagtctctcaattagccactctcagtgctttcttgatatc |
32217131 |
T |
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| Q |
141 |
attctgtcaaagatatgtgaaaatgcaaattaatttaacctctcaaagatatataaatatgcatagataaagaaatatgtatacaaagcaatttcagaga |
240 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32217132 |
attctgtcaaagatatgtgaaaatgcaaaataatttaacctctcaaagatatataaatatgcatagataatgaaatatgtatacaaagcaatttcagaga |
32217231 |
T |
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| Q |
241 |
gagaaagaaaaagtacttcaatggctaatggttgagtggttggactataacgttggatgacacggccttcctcatcaactaaaaactttgtaaaattcca |
340 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32217232 |
gagaaagaaaaagtacttcaatggctaatggttgggtggttggactataacgttggatgacacggccttcctcatcaactaaaaactttgtaaaattcca |
32217331 |
T |
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| Q |
341 |
cttgatccttcttgatcccaaacttccacatttttgtgatttcaggtatttatacacaggt |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32217332 |
cttgatccttcttgatcccaaacttccacatttttgtgatttcaggtatttatacacaggt |
32217392 |
T |
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