View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15053_low_12 (Length: 401)
Name: NF15053_low_12
Description: NF15053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15053_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 12400557 - 12400185
Alignment:
| Q |
18 |
agttaaaatataaaagtagctttttggtatgcctaattagtttatcagtatgatccaagttggttattaaaactttttaattagtcatggacctaccact |
117 |
Q |
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| T |
12400557 |
agttaaaatataaaagtagctttttggtatgcctaattagtttatcagtatgatccaagttgtttattaaaactttttaattagtcatggacctaccact |
12400458 |
T |
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| Q |
118 |
aatagcagctttatgaaaaaa-tagttcaattattgtgacattatttattccacacacaaatttatattattannnnnnn-gtcgttcactattgtttca |
215 |
Q |
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| T |
12400457 |
aatagcagctttatgaaaaaaatagttcaattattgtgacattatttattacacacacaaatttatattattattttttttgtccttcactattgtttca |
12400358 |
T |
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| Q |
216 |
gattctatggtccaatatgaaatctaatgcaaacatttgtcctaagcatgtggtagttaaaaatgattacttactacttttgtcttgtctcaggtgtgaa |
315 |
Q |
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| T |
12400357 |
gattctatggtccaatatgaaatctaatgcaaacatttgtcctaagcatgtggtagttaaaaatgattacttactacttttgtcttgtctcaggtgtgaa |
12400258 |
T |
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| Q |
316 |
gccatgtctacttacccacgaacttatgacttcatacatggtgattcagttttcagcctctaccaacacaggt |
388 |
Q |
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| T |
12400257 |
gccatgtctacttacccacgaacttatgacttcatacatggtgattcagttttcagcctctaccaacacaggt |
12400185 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 362
Target Start/End: Complemental strand, 28637838 - 28637780
Alignment:
| Q |
304 |
ctcaggtgtgaagccatgtctacttacccacgaacttatgacttcatacatggtgattc |
362 |
Q |
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| T |
28637838 |
ctcaggtgtgaagccatgtccacttatcctagaacctatgactttatacatgctgattc |
28637780 |
T |
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