View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15053_low_13 (Length: 399)
Name: NF15053_low_13
Description: NF15053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15053_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 7 - 384
Target Start/End: Complemental strand, 29264064 - 29263688
Alignment:
| Q |
7 |
agcaaaggtctcatcagagtggatggcttttggttctttctacttcatgattcctcaggtgcataccctttgttctttccaaacactaatttggtccttc |
106 |
Q |
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| T |
29264064 |
agcaaaggtttcatcagagtggatggcttttggttctttctacttcatgattcctcaggtgcataccctttgttctttccaaaaactaatttggtccttc |
29263965 |
T |
|
| Q |
107 |
aatgtgtcaaacgttgttattatagtctttgaatgtatgaaattataaaaacatccttaaatgtttatttcctttgtgagtttggtctttgaatgtgtct |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29263964 |
aatgtgtcaaacgttgttattatagtctttgaatgtatgaaattataaaaacatccttaaatgtttatttcctttgtgagtttagtctttgaatgtgtct |
29263865 |
T |
|
| Q |
207 |
tttgttagttagtttggtcatcgaatatctctttcatcattgaatttagtccataaaactagtaacaaaagacatacctaaggatgtttttgtaatttta |
306 |
Q |
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| T |
29263864 |
tttgttagttagtttggtcatcgaatatctctttcatcattgaatttagtccataaaactagtaacaaaag-catacctaaggatgtttttgtaatttta |
29263766 |
T |
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| Q |
307 |
atacattcaaggaccatagtgacactacctcacacatttagggaccaaactgatgatttactcatttatagcattggc |
384 |
Q |
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| T |
29263765 |
atacattcaaggaccatagtgacactacctcacacatttagggaccaaactgatgatttactcatttatagcattggc |
29263688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 54469035 - 54469131
Alignment:
| Q |
127 |
tatagtctttgaatgtatgaaa-ttataaaaacatccttaaatgtttatttcctttgtgagtttggtctttgaatgtgtcttttgttagttagtttg |
222 |
Q |
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| T |
54469035 |
tatagtctttgaatgtttcaaaattacaaaaacatccatcaatgtgtttttccttagtgagtttcatcctagaatgtgtctttcgctagttagtttg |
54469131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 33088513 - 33088470
Alignment:
| Q |
197 |
gaatgtgtcttttgttagttagtttggtcatcgaatatctcttt |
240 |
Q |
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| T |
33088513 |
gaatgtgtcttttattagttagtttggtcatcaaatatatcttt |
33088470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 96 - 369
Target Start/End: Complemental strand, 10836377 - 10836103
Alignment:
| Q |
96 |
tttggtccttcaatgtgtcaaacgttgttattatagtctttgaatgtatgaaa-ttataaaaacatccttaaatgtttatttcctttgtgagtttggtct |
194 |
Q |
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|||||||||| |||||| || || ||| | ||||||| ||||||||| ||| ||| |||||||||||| ||| | | ||||||| |||||||||||| |
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| T |
10836377 |
tttggtccttagatgtgttaagcgctgtcactatagtccttgaatgtaacaaaattacaaaaacatccttcaatatgtctttccttagtgagtttggtcc |
10836278 |
T |
|
| Q |
195 |
ttgaatgtgtcttttgttagttagtttggtcatcgaatatctctttcatcattgaatttagtccataaaactagtaacaaaagacatacctaaggatgtt |
294 |
Q |
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| ||||||||||| |||||||||||||||| || || | |||| | || | | || |||| ||||| || |||||||||||| || || |||||| |
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| T |
10836277 |
tcaaatgtgtctttcgttagttagtttggtctccgtatgtgtcttccctctgtcagttgtgtccctaaaattactaacaaaagacacactcaaagatgtt |
10836178 |
T |
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| Q |
295 |
tttgtaattttaatacattcaaggaccatagtgacactacctcacacatttagggaccaaactgatgatttactc |
369 |
Q |
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|||| | ||||||||||| ||| || |||||||||| | ||||||||| ||| |||| ||||||||||||| |
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| T |
10836177 |
tttgatactttaatacatttaagtactatagtgacaccgctcgacacatttaaggaacaaaatgatgatttactc |
10836103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 10836308 - 10836352
Alignment:
| Q |
286 |
aaggatgtttttgtaattttaatacattcaaggaccatagtgaca |
330 |
Q |
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| T |
10836308 |
aaggatgtttttgtaattttgttacattcaaggactatagtgaca |
10836352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 10272499 - 10272537
Alignment:
| Q |
194 |
tttgaatgtgtcttttgttagttagtttggtcatcgaat |
232 |
Q |
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||||||| ||||||||||||||||||||||| ||||||| |
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| T |
10272499 |
tttgaatatgtcttttgttagttagtttggttatcgaat |
10272537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 7745062 - 7745026
Alignment:
| Q |
198 |
aatgtgtcttttgttagttagtttggtcatcgaatat |
234 |
Q |
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||||||||||||||||| ||||||||||||| ||||| |
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| T |
7745062 |
aatgtgtcttttgttagatagtttggtcatcaaatat |
7745026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 15316535 - 15316621
Alignment:
| Q |
146 |
aaattataaaaacatccttaaatgtttatttcctttgtgagtttggtctttgaatgtgtcttttgttagttagtttggtcatcgaat |
232 |
Q |
| |
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|||||| |||||||||| | ||||| | ||||||| |||||||||||| |||||||| ||||| ||||||| |||| || |||||| |
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| T |
15316535 |
aaattagaaaaacatccctgaatgtgtctttccttggtgagtttggtccttgaatgtatctttcattagttaatttgatcgtcgaat |
15316621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 15316699 - 15316743
Alignment:
| Q |
324 |
agtgacactacctcacacatttagggaccaaactgatgatttact |
368 |
Q |
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| T |
15316699 |
agtgacactacctcacacatttagcgaccgaattgacgatttact |
15316743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 347
Target Start/End: Complemental strand, 28758757 - 28758703
Alignment:
| Q |
293 |
tttttgtaattttaatacattcaaggaccatagtgacactacctcacacatttag |
347 |
Q |
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||||||||||||| ||| ||||||| || ||| ||| |||||||||||||||||| |
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| T |
28758757 |
tttttgtaattttgatagattcaagaacaataatgatactacctcacacatttag |
28758703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 357
Target Start/End: Original strand, 32621957 - 32622045
Alignment:
| Q |
269 |
taacaaaagacatacctaaggatgtttttgtaattttaatacattcaaggaccatagtgacactacctcacacatttagggaccaaact |
357 |
Q |
| |
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|||||||||| |||| | |||||| ||||||||||| ||||||| ||| | ||||||||| | | |||||||||||||||||||| |
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| T |
32621957 |
taacaaaagagatacatggggatgtgtttgtaattttgatacatttgaggcctatagtgacagtgcggtacacatttagggaccaaact |
32622045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 44822247 - 44822319
Alignment:
| Q |
275 |
aagacatacctaaggatgtttttgtaattttaatacattcaaggaccatagtgacactacctcacacatttag |
347 |
Q |
| |
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||||||||| || |||||||||||||||||| |||||| |||| || || ||||| | ||||||||||||| |
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| T |
44822247 |
aagacatacttagggatgtttttgtaattttgatacatccaagaactattgtgacgacaactcacacatttag |
44822319 |
T |
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