View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15053_low_18 (Length: 281)

Name: NF15053_low_18
Description: NF15053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15053_low_18
NF15053_low_18
[»] chr3 (8 HSPs)
chr3 (1-264)||(20016637-20016900)
chr3 (29-264)||(19811728-19811960)
chr3 (29-158)||(19837829-19837955)
chr3 (27-71)||(19848439-19848483)
chr3 (29-123)||(19955517-19955608)
chr3 (30-159)||(19988977-19989103)
chr3 (70-264)||(26646496-26646690)
chr3 (31-256)||(19818004-19818229)
[»] chr5 (3 HSPs)
chr5 (30-264)||(9814483-9814717)
chr5 (30-257)||(2319479-2319706)
chr5 (32-169)||(26355460-26355594)
[»] chr4 (1 HSPs)
chr4 (32-257)||(55864471-55864696)
[»] chr7 (3 HSPs)
chr7 (30-257)||(47331558-47331788)
chr7 (30-257)||(45887492-45887719)
chr7 (30-257)||(48259459-48259686)
[»] chr1 (1 HSPs)
chr1 (32-116)||(1716671-1716752)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 20016900 - 20016637
Alignment:
Q  1 aatgatgaatgagaagccatttaatgctatgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcc 100  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016900 aatgatgaatgagaagccattgaatgctatcatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcc 20016801  T
Q  101 cattttttaaaacccatttcaaattacattcatgaatcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016800 cattttttaaaacccatttcaaattacattcatgaatcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttga 20016701  T
Q  201 agtttcatttcactgggtggcgccacccacaagacaaatgggtttgttgggttgatcagcttaa 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016700 agtttcatttcactgggtggcgccacccacaagacaaatgggtttgttgggttgatcagcttaa 20016637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 19811728 - 19811960
Alignment:
Q  29 atgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattaca 128  Q
    |||||||| || ||||||||||||||||| |||||| ||||||   ||| |||  ||||| |||||||||| |||||| | |||||||||||||| | ||    
T  19811728 atgatggaagtcagggaagatttcatgctttcaccttctggtg---acagtgattcaactttcagaactgctcattttcttaaacccatttcaaactcca 19811824  T
Q  129 ttcatgaatcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccaccc 228  Q
    |||||||| || ||||||  ||||||||||  |||   |||  | | ||| ||| ||| ||||  ||||||||  | ||||||| ||| ||||| |||||    
T  19811825 ttcatgaaccagcttttgagtttaatccattttcatcatcttctttttttgatcaaaatgagtgtcctttgaaaatccatttcagtggatggcgtcaccc 19811924  T
Q  229 acaagacaaatgggtttgttgggttgatcagcttaa 264  Q
    |||||| || |||||| | ||||||||| |||||||    
T  19811925 acaagagaagtgggttagatgggttgatgagcttaa 19811960  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 19837829 - 19837955
Alignment:
Q  29 atgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattaca 128  Q
    ||||||||||||||||||||||||||||| |||| |||   |||||| | ||||||||| |||||||||||||||||| | ||||| ||| |||| | ||    
T  19837829 atgatggaggtgagggaagatttcatgctttcacttgc---tggtgatagtgaagcaacactcagaactgcccattttcttaaacctattgcaaactcca 19837925  T
Q  129 ttcatgaatcaccttttggttttaatccat 158  Q
    || | ||| ||||||||  |||||| ||||    
T  19837926 ttgaagaaccaccttttaattttaagccat 19837955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 19848439 - 19848483
Alignment:
Q  27 ctatgatggaggtgagggaagatttcatgctctcacctgctggtg 71  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||    
T  19848439 ctatgatggaggtgagggaagatttcatgctttcaccagctggtg 19848483  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 19955517 - 19955608
Alignment:
Q  29 atgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaa 123  Q
    |||||||||||||||||||| |||||||| ||||| ||||||| |   | |||  |||| |||||||| ||||||||| | ||||||||||||||    
T  19955517 atgatggaggtgagggaagagttcatgctttcaccagctggtgat---agtgatccaacactcagaacagcccattttcttaaacccatttcaaa 19955608  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 19988977 - 19989103
Alignment:
Q  30 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 129  Q
    |||||||||||| |||||||  |||||| ||||| |||||||   ||| |||| ||| ||||||||  ||||||||| | ||||||||||||||   |||    
T  19988977 tgatggaggtgaaggaagatcacatgctttcaccagctggtg---acagtgaaccaattctcagaatcgcccattttctcaaacccatttcaaacaccat 19989073  T
Q  130 tcatgaatcaccttttggttttaatccatc 159  Q
    | | ||| |||||| ||| |||||||||||    
T  19989074 tgaagaaccaccttctgggtttaatccatc 19989103  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 264
Target Start/End: Original strand, 26646496 - 26646690
Alignment:
Q  70 tggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacattcatgaatcaccttttggttttaatccatcatcaatgtct 169  Q
    |||||||| || | ||||||||||||  ||||||||| | ||||| ||| ||||   |||||||||| || ||||||  ||||| | |||||||  ||||    
T  26646496 tggtgacagtgcaccaactctcagaatcgcccattttctgaaaccaattgcaaacaccattcatgaaccagcttttgagtttaaacaatcatcaccgtct 26646595  T
Q  170 cgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccacccacaagacaaatgggtttgttgggttgatcagcttaa 264  Q
      ||| ||| | |||||||||| |||||||||  |  | |||||||| ||||| | |||||  | |||||||||| | ||||||||||| |||||    
T  26646596 tctgtttttgaaccaaaggagtggcctttgaaaatcaacttcactggttggcgtcgcccacgcgccaaatgggttagatgggttgatcaacttaa 26646690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 256
Target Start/End: Original strand, 19818004 - 19818229
Alignment:
Q  31 gatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacatt 130  Q
    ||||||||| || |||||||||||||| ||||||||   |||||||| |||  |||| ||||||||||| |||||| | || ||  || |||| | ||||    
T  19818004 gatggaggttagagaagatttcatgctttcacctgc---tggtgacagtgatccaacactcagaactgctcattttctcaagcctgttgcaaactccatt 19818100  T
Q  131 catgaatcaccttttggttttaatcca---tcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccacc 227  Q
     ||||| |||||||||   ||||||||   ||||||   ||   ||| ||| ||||||| ||||  ||||||||  | ||||||| ||| |||||||| |    
T  19818101 gatgaaccaccttttgagcttaatccattttcatcatcttcatctgtttttgatccaaatgagtgtcctttgaaaatacatttcaatggatggcgccaac 19818200  T
Q  228 cacaagacaaatgggtttgttgggttgat 256  Q
     |||||| |||||| || |||||||||||    
T  19818201 aacaagagaaatggtttagttgggttgat 19818229  T

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Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 30 - 264
Target Start/End: Original strand, 9814483 - 9814717
Alignment:
Q  30 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 129  Q
    |||||||||||||||||||||||||| |||||||  |   |||| ||| |||||||||||| ||||  || |||||| |||||||||||||||||| |||    
T  9814483 tgatggaggtgagggaagatttcatgatctcaccaac---tggtcacagtgaagcaactcttagaatggctcattttctaaaacccatttcaaattccat 9814579  T
Q  130 tcatga---atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccac 226  Q
    ||||||   |||||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| ||||||||| || ||||||| ||| |||||  ||    
T  9814580 tcatgaaccatcaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttcaatggatggcgttac 9814679  T
Q  227 ccacaagacaaatgggtttgttgggttgatcagcttaa 264  Q
    |||||||| |||||| ||| |||||||||||| |||||    
T  9814680 ccacaagagaaatggatttattgggttgatcaacttaa 9814717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 2319706 - 2319479
Alignment:
Q  30 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 129  Q
    |||||||||||||||||||||||||| |||||||  |   |||| ||| |||||||||||| ||||  || |||||| |||||||||||||||||| |||    
T  2319706 tgatggaggtgagggaagatttcatgatctcaccaac---tggtcacagtgaagcaactcttagaatggctcattttctaaaacccatttcaaattccat 2319610  T
Q  130 tcatga---atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccac 226  Q
    | ||||   || ||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| ||||||||| || ||||||| ||| ||||| |||    
T  2319609 ttatgaaccatgaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttcaatggatggcgtcac 2319510  T
Q  227 ccacaagacaaatgggtttgttgggttgatc 257  Q
    |||||||| |||||| ||| |||||||||||    
T  2319509 ccacaagagaaatggatttattgggttgatc 2319479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 169
Target Start/End: Complemental strand, 26355594 - 26355460
Alignment:
Q  32 atggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacattc 131  Q
    ||||||| |||||||||||||||||||||||| | ||||    ||| |||||||||| ||||||  ||||||||| |||||||||||||||||| |||||    
T  26355594 atggaggagagggaagatttcatgctctcaccagatggtc---acagtgaagcaactttcagaatagcccattttctaaaacccatttcaaattccattc 26355498  T
Q  132 atgaatcaccttttggttttaatccatcatcaatgtct 169  Q
    |||||  ||||||||| ||||| |||||||||||||||    
T  26355497 atgaacaaccttttggctttaacccatcatcaatgtct 26355460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 32 - 257
Target Start/End: Complemental strand, 55864696 - 55864471
Alignment:
Q  32 atggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacattc 131  Q
    |||||||||||||||||||||||| |||||||  |   |||| ||| |||||||||||| ||||   | |||||| |||||||||||||||||| |||||    
T  55864696 atggaggtgagggaagatttcatgatctcaccaac---tggtcacagtgaagcaactcttagaatgactcattttctaaaacccatttcaaattccattc 55864600  T
Q  132 atga---atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccaccc 228  Q
    ||||   |||||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| ||||||||| || ||||||| ||| ||||| |||||    
T  55864599 atgaaccatcaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttcaatggttggcgtcaccc 55864500  T
Q  229 acaagacaaatgggtttgttgggttgatc 257  Q
    |||||| |||||| ||| |||||||||||    
T  55864499 acaagagaaatggatttattgggttgatc 55864471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 47331558 - 47331788
Alignment:
Q  30 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 129  Q
    ||||| |||||||||||||||||||| |||||||  ||||||   ||| |||||||||||| ||||  || |||||| |||||||||||||||||| |||    
T  47331558 tgatgaaggtgagggaagatttcatgatctcaccaactggtg---acagtgaagcaactcttagaatggctcattttctaaaacccatttcaaattccat 47331654  T
Q  130 tcatgaa------tcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgc 223  Q
    |||||||      ||||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| | ||||||| || ||||||| ||| |||||     
T  47331655 tcatgaaccatcatcaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggtctttgaaattccatttcaatggatggcgt 47331754  T
Q  224 cacccacaagacaaatgggtttgttgggttgatc 257  Q
    ||||||||||| |||||| ||| |||||||||||    
T  47331755 cacccacaagagaaatggatttattgggttgatc 47331788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 45887719 - 45887492
Alignment:
Q  30 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 129  Q
    |||||||||||||||||||||||||| |||||||  |   |||| ||| |||||||||||| ||||  || |||||| |||||||||||||||||| |||    
T  45887719 tgatggaggtgagggaagatttcatgatctcaccaac---tggtcacagtgaagcaactcttagaatggctcattttctaaaacccatttcaaattccat 45887623  T
Q  130 tcatga---atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccac 226  Q
    | ||||   || ||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| ||||||||| || ||||||| ||| ||||| |||    
T  45887622 ttatgaaccatgaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttcaatggatggcgtcac 45887523  T
Q  227 ccacaagacaaatgggtttgttgggttgatc 257  Q
    |||||||| |||||  ||| |||||||||||    
T  45887522 ccacaagagaaatgtatttattgggttgatc 45887492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 48259686 - 48259459
Alignment:
Q  30 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 129  Q
    ||||| |||||||||||||||||||| |||||||  | |||    ||| |||| ||||||| ||||  || |||||| |||||| ||||||||||| |||    
T  48259686 tgatgaaggtgagggaagatttcatgatctcaccaaccggtc---acagtgaaacaactcttagaatggctcattttctaaaactcatttcaaattccat 48259590  T
Q  130 tcatgaa---tcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccac 226  Q
    |||||||   ||||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| ||||||||| || ||||||| ||| ||||| |||    
T  48259589 tcatgaaccatcaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttcaatggatggcgtcac 48259490  T
Q  227 ccacaagacaaatgggtttgttgggttgatc 257  Q
    |||||||| |||||| ||| |||||||||||    
T  48259489 ccacaagagaaatggatttattgggttgatc 48259459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 1716671 - 1716752
Alignment:
Q  32 atggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaaccca 116  Q
    |||||||||||||||||||||||||| ||||   ||||| |||| | |||| ||||  ||||||| ||||||||| | |||||||    
T  1716671 atggaggtgagggaagatttcatgctttcac---ctggttgtgagaatgaaccaacattcagaacagcccattttctcaaaccca 1716752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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