View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15053_low_2 (Length: 517)
Name: NF15053_low_2
Description: NF15053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15053_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 57 - 499
Target Start/End: Original strand, 6036735 - 6037177
Alignment:
| Q |
57 |
ttggaattttggtatcggataatgcaatgtctcaaatcgcaatcattttgaataaacaccaaattgaagggcttccatcagcaactgcaacagcaaaatt |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6036735 |
ttggaattttggtatcggataatgcaatgtctcaaatcgcaatcattttcaataaacgccaaattgaagggcttccatcagcaactgcaacagcaaaatt |
6036834 |
T |
|
| Q |
157 |
aataagctgaaacattgctccgtggaaaatctctgtgaaaaaacgagtagcagaggaggtgaaacccaaaatgaagtgatcacatagccgttgttcggat |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6036835 |
aataagctgaaacattgctccgtggaaaatctctgtgaaaaaatgagtagcagaggaggtgaaacccaaaatgaagtgatcacatagccgttgttcggat |
6036934 |
T |
|
| Q |
257 |
ggaaataaaatttgagagagatatctgatgatttgatccatcttttaatcacgatatctagatatttcaccttttgatgttcattcttgatgttaatctt |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6036935 |
ggaaataaaatttgagagagatatctgatgatttgatccatcttttaatcacggtatctagatatttcaccttttgatgttcaatcttgatgttaatctt |
6037034 |
T |
|
| Q |
357 |
ctgccagctgaataatctatttattatacactcctccaaacatttctttctacaatcggtatatacatagaaaactcttcctcaaacccagccctcacca |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6037035 |
ctgccagctgaataatctatttattatacactcctccaaacatttctttctacaatcggtatatacatagaaaactcttcctcaaatccagccctcacca |
6037134 |
T |
|
| Q |
457 |
tcaactttgtggtttcatgaaggtagttgatctattcatacag |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6037135 |
tcaactttgtggtttcatgaaggtagttgatctattcatacag |
6037177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 78 - 487
Target Start/End: Original strand, 31474921 - 31475334
Alignment:
| Q |
78 |
atgcaatgtctcaaa--tcgcaatcattttgaataaacaccaaattgaagggcttccatcagcaactgcaacagcaaaattaataagctgaaacattgct |
175 |
Q |
| |
|
||||||||||||||| | || | ||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| | |||||||||| ||||| |
|
|
| T |
31474921 |
atgcaatgtctcaaagattgcgagcattttgaataaacaccaaatggaagggcttccatcagcaactgcatcagcgaaattcagaagctgaaacgttgct |
31475020 |
T |
|
| Q |
176 |
ccgtggaaaatctctgtgaaaaaacgagtagcagaggaggtgaaacccaaaatgaagtgatcacatagccgttgttcggatggaaataaaat-ttgagag |
274 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| | |||||| ||| || |||||||| || |||||||| ||||||||| ||| || |||| |
|
|
| T |
31475021 |
ccgtggaaaacctctgtgaaacaacgagtagcagaggaagcgaaacctgaaaagacatgatcacagagtcgttgttcaaatggaaatagaatcttcagag |
31475120 |
T |
|
| Q |
275 |
agatatctgatgatttgatccatcttttaatcacgatatctagatatttcaccttttgatgttcattcttgatgttaatcttctgccagctgaataatct |
374 |
Q |
| |
|
|||| ||||||| | ||||||| |||||||||| |||||| |||||||||| |||||| ||||||| |||||||||||| |||| ||| ||||||||| |
|
|
| T |
31475121 |
agatttctgatgctgtgatccactttttaatcacattatctacatatttcaccctttgattttcattcatgatgttaatctgctgcaagccgaataatct |
31475220 |
T |
|
| Q |
375 |
atttattatacactcctccaaacatttctttctacaatcggtatataca-tagaaaactcttcctcaaacccagccctcaccatcaactttgtggtttca |
473 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||| | | |||||| ||||||||||||||||||||||||| || ||||| ||||| | ||||||| |
|
|
| T |
31475221 |
atttattagacactcctccaaacatttccttctacaattgatgtatacattagaaaactcttcctcaaacccagcacttaccatgaacttcgcggtttca |
31475320 |
T |
|
| Q |
474 |
tgaaggtagttgat |
487 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
31475321 |
tgaaggtagttgat |
31475334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 58 - 297
Target Start/End: Original strand, 40842461 - 40842703
Alignment:
| Q |
58 |
tggaattttggtatcggataatgcaatgtctcaaa--tcgcaatcattttgaataaacaccaaattgaagggcttccatcagcaactgcaacagcaaaat |
155 |
Q |
| |
|
|||||||| | |||| ||| |||||| |||||||| | |||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
40842461 |
tggaatttcgatatcagatgatgcaaagtctcaaagattgcaagcattttgaataaacaccaaatggaagggcttccatcagcaactgcattagcaaaat |
40842560 |
T |
|
| Q |
156 |
taataagctgaaacattgctccgtggaaaatctctgtgaaaaaacgagtagcagaggaggtgaaacccaaaatgaagtgatcacatagccgttgttcgga |
255 |
Q |
| |
|
| | ||||||||| ||| ||||||||||| |||||||||| |||||||||||||||||| |||||| ||| || |||||||| || |||||||| | |
|
|
| T |
40842561 |
ttagaagctgaaatgttgatccgtggaaaacctctgtgaaacaacgagtagcagaggaggcgaaacctgaaaagacatgatcacagagtcgttgttcaaa |
40842660 |
T |
|
| Q |
256 |
tggaaataaaat-ttgagagagatatctgatgatttgatccat |
297 |
Q |
| |
|
|||||||| ||| || |||| ||| ||||||| | |||||||| |
|
|
| T |
40842661 |
tggaaatagaatcttaagagcgatttctgatgctgtgatccat |
40842703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University