View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15053_low_22 (Length: 244)

Name: NF15053_low_22
Description: NF15053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15053_low_22
NF15053_low_22
[»] scaffold0201 (1 HSPs)
scaffold0201 (11-228)||(13244-13461)
[»] scaffold0570 (2 HSPs)
scaffold0570 (11-228)||(9879-10096)
scaffold0570 (141-211)||(3472-3542)
[»] chr3 (16 HSPs)
chr3 (48-225)||(23353604-23353781)
chr3 (88-225)||(23465147-23465284)
chr3 (53-225)||(23435180-23435352)
chr3 (78-225)||(23449004-23449151)
chr3 (12-225)||(23455700-23455915)
chr3 (78-225)||(23500767-23500914)
chr3 (88-225)||(23406493-23406630)
chr3 (84-228)||(23441620-23441764)
chr3 (84-228)||(23474152-23474296)
chr3 (19-225)||(23480434-23480641)
chr3 (77-228)||(23388122-23388273)
chr3 (131-226)||(36034062-36034157)
chr3 (131-226)||(36017156-36017251)
chr3 (11-39)||(23448976-23449004)
chr3 (11-39)||(23500739-23500767)
chr3 (94-214)||(36004456-36004576)


Alignment Details
Target: scaffold0201 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 13244 - 13461
Alignment:
Q  11 cataggatatagtttattgatttacttagcattttttaaacttacaagtcatgacatgtggaaagttggatagttcgttttacttacctatagtttcgag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13244 cataggatatagtttattgatttacttagcattttttaaacttacaagtcatgacatgtggaaagttggatagttcgttttacttacctataatttcgag 13343  T
Q  111 agtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaactcatcgttattgtgcttcaaatctcgcttatgttttgcgaaggc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  13344 agtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaacttatcgttattgtgcttcaaatctcgcttatgttttgcaaaggc 13443  T
Q  211 ttgctggtaactcccagt 228  Q
    |||||||||||| |||||    
T  13444 ttgctggtaacttccagt 13461  T

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Target: scaffold0570 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 10096 - 9879
Alignment:
Q  11 cataggatatagtttattgatttacttagcattttttaaacttacaagtcatgacatgtggaaagttggatagttcgttttacttacctatagtttcgag 110  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10096 cataggatatagcttattgatttacttagaattttttaaacttacaagtcatgacatgtggaaagttggatagttcgttttacttacctataatttcgag 9997  T
Q  111 agtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaactcatcgttattgtgcttcaaatctcgcttatgttttgcgaaggc 210  Q
    ||||||||||||||||||||||||| || |||||||| |||||||| |||| |||||  || ||||||  |||||||||||||||||||||| | |||||    
T  9996 agtcccaaccaactaaattagctgcctcggtgagagcggctttccagttcttcaacttgtcattattgctcttcaaatctcgcttatgtttttcaaaggc 9897  T
Q  211 ttgctggtaactcccagt 228  Q
    ||||| |||||| |||||    
T  9896 ttgctcgtaacttccagt 9879  T

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Target: scaffold0570; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 3542 - 3472
Alignment:
Q  141 tgagagcagctttccatttctccaactcatcgttattgtgcttcaaatctcgcttatgttttgcgaaggct 211  Q
    ||||| ||||||||||||||| |||||  || |||||||||||||  |||||| |||||||| ||||||||    
T  3542 tgagaccagctttccatttctgcaacttgtcattattgtgcttcagttctcgcctatgtttttcgaaggct 3472  T

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Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 48 - 225
Target Start/End: Original strand, 23353604 - 23353781
Alignment:
Q  48 aaacttacaagtcatgacatgtggaaagttggatagttcgttttacttacctatagtttcgagagtcccaaccaactaaattagctgcatcagtgagagc 147  Q
    |||| ||||||||||||||||| ||| | | |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| || ||||||||    
T  23353604 aaacatacaagtcatgacatgtagaatgcttgatagttcgttttactcacctataatttcgagagtcccaaccaactaaattagctgcctcggtgagagc 23353703  T
Q  148 agctttccatttctccaactcatcgttattgtgcttcaaatctcgcttatgttttgcgaaggcttgctggtaactccc 225  Q
    ||||||||||||||||||||  || |||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  23353704 agctttccatttctccaacttgtcattattgtgcttcaaatctcgcttatgtttttcaaaggcttgcttgtaactccc 23353781  T

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Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 23465147 - 23465284
Alignment:
Q  88 ttttacttacctatagtttcgagagtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaactcatcgttattgtgcttcaaa 187  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23465147 ttttacttacctataatttcgagagtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaacttatcgttattgtgcttcaaa 23465246  T
Q  188 tctcgcttatgttttgcgaaggcttgctggtaactccc 225  Q
    | ||||||||||||||| |||||||||| |||||||||    
T  23465247 tttcgcttatgttttgcaaaggcttgcttgtaactccc 23465284  T

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Target: chr3; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 53 - 225
Target Start/End: Original strand, 23435180 - 23435352
Alignment:
Q  53 tacaagtcatgacatgtggaaagttggatagttcgttttacttacctatagtttcgagagtcccaaccaactaaattagctgcatcagtgagagcagctt 152  Q
    ||||||||||||||||| ||||  ||||||| ||||||| |||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||    
T  23435180 tacaagtcatgacatgtagaaatctggataggtcgtttttcttacctataattttgagagtcccaaccaactaaattagctgcctcagtgagagcggctt 23435279  T
Q  153 tccatttctccaactcatcgttattgtgcttcaaatctcgcttatgttttgcgaaggcttgctggtaactccc 225  Q
    ||||||| | |||||  || |||||||||||||||||||||||||||||||| || ||||||| |||||||||    
T  23435280 tccatttatgcaacttgtcattattgtgcttcaaatctcgcttatgttttgcaaatgcttgcttgtaactccc 23435352  T

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Target: chr3; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 78 - 225
Target Start/End: Original strand, 23449004 - 23449151
Alignment:
Q  78 ggatagttcgttttacttacctatagtttcgagagtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaactcatcgttatt 177  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||| | |||||||||||| |||||  || |||||    
T  23449004 ggatagttcgttttacttacctataatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattatt 23449103  T
Q  178 gtgcttcaaatctcgcttatgttttgcgaaggcttgctggtaactccc 225  Q
    ||||||||||||| ||||||||||||| |||||||||| |||||||||    
T  23449104 gtgcttcaaatcttgcttatgttttgcaaaggcttgcttgtaactccc 23449151  T

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Target: chr3; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 23455700 - 23455915
Alignment:
Q  12 ataggatatagtttattgattt-acttagcattttttaaacttacaagtcatga-catgtggaaagttggatagttcgttttacttacctatagtttcga 109  Q
    |||||| ||||||||||||||| |||| | |||||  |||| ||||||| |||| ||| |  |||| ||||||||| |||||| ||||||||| ||| ||    
T  23455700 ataggaaatagtttattgattttactttgaattttggaaacatacaagtgatgaacatatccaaagctggatagtttgttttatttacctataattttga 23455799  T
Q  110 gagtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaactcatcgttattgtgcttcaaatctcgcttatgttttgcgaagg 209  Q
    |||||||| ||||||||||||||||| ||||||||||  |||||||||||||||||||   | |||||||||||||||||| ||||||||||||| ||||    
T  23455800 gagtcccatccaactaaattagctgcctcagtgagagaggctttccatttctccaacttggcattattgtgcttcaaatcttgcttatgttttgcaaagg 23455899  T
Q  210 cttgctggtaactccc 225  Q
    |||||| |||||||||    
T  23455900 cttgcttgtaactccc 23455915  T

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Target: chr3; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 78 - 225
Target Start/End: Original strand, 23500767 - 23500914
Alignment:
Q  78 ggatagttcgttttacttacctatagtttcgagagtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaactcatcgttatt 177  Q
    |||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| || ||||||| | |||||||||||| |||||  || |||||    
T  23500767 ggatagttcgttttacttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattatt 23500866  T
Q  178 gtgcttcaaatctcgcttatgttttgcgaaggcttgctggtaactccc 225  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||    
T  23500867 gtgcttcaaatctcgcttatgttttgcaaaggcttgcttgtaactccc 23500914  T

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Target: chr3; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 23406493 - 23406630
Alignment:
Q  88 ttttacttacctatagtttcgagagtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaactcatcgttattgtgcttcaaa 187  Q
    |||||||| |||||| ||| |||||||||||||||| ||||||||||| |||||||||| | |||||||||||| |||||  || ||||||||||| |||    
T  23406493 ttttacttgcctataattttgagagtcccaaccaaccaaattagctgcctcagtgagagaatctttccatttcttcaacttgtcattattgtgctttaaa 23406592  T
Q  188 tctcgcttatgttttgcgaaggcttgctggtaactccc 225  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  23406593 tctcgcttatgttttgcaaaggcttgcttgtaactccc 23406630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 23441620 - 23441764
Alignment:
Q  84 ttcgttttacttacctatagtttcgagagtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaactcatcgttattgtgctt 183  Q
    ||||||||  |||||| || ||| |||||||||||||||||||| ||||||| |||||||| ||| ||||||||| ||  ||||  || ||||||  |||    
T  23441620 ttcgttttgtttacctgtaattttgagagtcccaaccaactaaactagctgcctcagtgagtgcatctttccattcctgtaacttgtcattattgctctt 23441719  T
Q  184 caaatctcgcttatgttttgcgaaggcttgctggtaactcccagt 228  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  23441720 caaatctcgcttatgttttgcgaaggcttgcttgtaactcccagt 23441764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 23474152 - 23474296
Alignment:
Q  84 ttcgttttacttacctatagtttcgagagtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaactcatcgttattgtgctt 183  Q
    ||||||||  |||||| || ||| |||||||||||||||||||| ||||||| |||||||| ||| ||||||||| ||  ||||  || ||||||  |||    
T  23474152 ttcgttttgtttacctgtaattttgagagtcccaaccaactaaactagctgcctcagtgagtgcatctttccattcctgtaacttgtcattattgctctt 23474251  T
Q  184 caaatctcgcttatgttttgcgaaggcttgctggtaactcccagt 228  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  23474252 caaatctcgcttatgttttgcgaaggcttgcttgtaactcccagt 23474296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 23480434 - 23480641
Alignment:
Q  19 atagtttattgattt-acttagcattttttaaacttacaagtcatgacatgtggaaagttggatagttcgttttacttacctatagtttcgagagtccca 117  Q
    ||||||||||| ||| |||||| |||||   ||| ||||||||||| |||||  |||| | |||||||||||||||||||  | | ||| || |||||||    
T  23480434 atagtttattggttttacttagaattttgagaacatacaagtcatggcatgtacaaagctcgatagttcgttttacttactcaaaattttgaaagtccca 23480533  T
Q  118 accaactaaattagctgcatcagtgagagcagctttccatttctccaactcatcgttattgtgcttcaaatctcgcttatgttttgcgaaggcttgctgg 217  Q
    |||  ||||| ||||||| ||||||||||| |||||||||| ||  ||||  || ||||||  |||||||||||||||||||||||| || ||||||| |    
T  23480534 accgcctaaactagctgcctcagtgagagcggctttccattcctgtaacttgtcattattgctcttcaaatctcgcttatgttttgcaaaagcttgctcg 23480633  T
Q  218 taactccc 225  Q
    ||||||||    
T  23480634 taactccc 23480641  T

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Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 228
Target Start/End: Original strand, 23388122 - 23388273
Alignment:
Q  77 tggatagttcgttttacttacctatagtttcgagagtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaactcatcgttat 176  Q
    |||| ||||| ||| |||||||| || ||  || ||||||||||||||||| ||||||| || |  ||||| |||||||||| ||  ||||  || ||||    
T  23388122 tggagagttcctttaacttacctgtaattctgaaagtcccaaccaactaaactagctgcctcggcaagagcggctttccattcctgtaacttgtcattat 23388221  T
Q  177 tgtgcttcaaatctcgcttatgttttgcgaaggcttgctggtaactcccagt 228  Q
    || |||||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  23388222 tgagcttcaaatctcgcatatgttttgtgaaggcttgctcgtaactcccagt 23388273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 36034062 - 36034157
Alignment:
Q  131 gctgcatcagtgagagcagctttccatttctccaactcatcgttattgtgcttcaaatctcgcttatgttttgcgaaggcttgctggtaactccca 226  Q
    ||||| |||||||||||| ||||| |||||| |||||  || || ||||||||||||| | ||||||| ||||| |||||||||| ||||||||||    
T  36034062 gctgcttcagtgagagcatctttctatttctgcaacttgtctttgttgtgcttcaaattttgcttatgctttgcaaaggcttgcttgtaactccca 36034157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 36017156 - 36017251
Alignment:
Q  131 gctgcatcagtgagagcagctttccatttctccaactcatcgttattgtgcttcaaatctcgcttatgttttgcgaaggcttgctggtaactccca 226  Q
    ||||| |||||||||||| ||||| |||||| |||||  || || ||||||||||||| | ||||||  ||||| |||||||||| ||||||||||    
T  36017156 gctgcttcagtgagagcatctttctatttctgcaacttgtctttgttgtgcttcaaattttgcttattctttgcaaaggcttgcttgtaactccca 36017251  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 23448976 - 23449004
Alignment:
Q  11 cataggatatagtttattgatttacttag 39  Q
    |||||||||||||||||||||||||||||    
T  23448976 cataggatatagtttattgatttacttag 23449004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 23500739 - 23500767
Alignment:
Q  11 cataggatatagtttattgatttacttag 39  Q
    |||||||||||||||||||||||||||||    
T  23500739 cataggatatagtttattgatttacttag 23500767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 214
Target Start/End: Original strand, 36004456 - 36004576
Alignment:
Q  94 ttacctatagtttcgagagtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaactcatcgttattgtgcttcaaatctcgc 193  Q
    |||||| || ||| |||||| ||| ||  ||||||| ||||| ||||| |||||| ||||||||||||  |||   || || || ||||||||||||||     
T  36004456 ttacctgtaattttgagagtgccaccctgctaaattggctgcttcagttagagcatctttccatttctttaacatttctttgttctgcttcaaatctcgt 36004555  T
Q  194 ttatgttttgcgaaggcttgc 214  Q
      ||||||||| |||||||||    
T  36004556 gcatgttttgcaaaggcttgc 36004576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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