View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15053_low_23 (Length: 244)
Name: NF15053_low_23
Description: NF15053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15053_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 33093384 - 33093596
Alignment:
| Q |
18 |
gatatgcttatatgtgtagcaaatgaagatcttcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgt |
117 |
Q |
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| T |
33093384 |
gatatgcttatctctgtagcaaatgaagatcttcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgt |
33093483 |
T |
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| Q |
118 |
caaagtgtagatttgtgcagcatctaaatcttcaaaaggcaaagtttttgaatgatgatgacaactcctcaatgttgtatccatatcttcgcgatttggt |
217 |
Q |
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| T |
33093484 |
caaagtgtagatttgtgcagcatctaaatcttcaaaatgcaaagtttttgaatgatgatgacaactcctcaatgttgtatccatatcttcgcgatttggt |
33093583 |
T |
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| Q |
218 |
gtctataaatgtc |
230 |
Q |
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| T |
33093584 |
gtctataaatgtc |
33093596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 173
Target Start/End: Original strand, 33708500 - 33708626
Alignment:
| Q |
47 |
tcttcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcatctaaat |
146 |
Q |
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| T |
33708500 |
tcttcctttgaggaaacttgtcctccaaggtcgctgccaatatacttataccggtatctcttgtttcttgtcaaagtgtcgatctctgcagcatctagat |
33708599 |
T |
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| Q |
147 |
cttcaaaaggcaaagtttttgaatgat |
173 |
Q |
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| T |
33708600 |
attcaacgtgcaaagtttttgaatgat |
33708626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 173
Target Start/End: Original strand, 36810493 - 36810625
Alignment:
| Q |
41 |
tgaagatcttcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcat |
140 |
Q |
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| T |
36810493 |
tgaagctcttcctttgagggaacttatcctccaagattgcttcaattatacatatcatgggatctcttatctactgtcaaagtgtcgatttctacagctt |
36810592 |
T |
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| Q |
141 |
ctaaatcttcaaaaggcaaagtttttgaatgat |
173 |
Q |
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| T |
36810593 |
ctagatcttcaagatgcaaagtttttgaatgat |
36810625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 33714390 - 33714461
Alignment:
| Q |
102 |
atctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatcttcaaaaggcaaagtttttgaatgat |
173 |
Q |
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| T |
33714390 |
atctcttgtttcttgtcaaattgtcgatctctgcagcatctagatcttcaatgtgcaaagtttttgaatgat |
33714461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 173
Target Start/End: Original strand, 37580306 - 37580429
Alignment:
| Q |
50 |
tcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatctt |
149 |
Q |
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| T |
37580306 |
tcctttgaggaaacttgtcctcaaagattgctccaactacacatattctgggatatattatttattgtcaaagtgtcaatcactgaagcatctagatatt |
37580405 |
T |
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| Q |
150 |
caaaaggcaaagtttttgaatgat |
173 |
Q |
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||||| |||| ||||||||||||| |
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| T |
37580406 |
caaaaagcaacgtttttgaatgat |
37580429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 18723872 - 18723944
Alignment:
| Q |
98 |
cgggatctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatcttcaaaaggcaaagtttttgaat |
170 |
Q |
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| T |
18723872 |
cgggatctcttatctcttgtcaaagtgtcgatttctgcaacatctagatctttaaaatgcaatctttttgaat |
18723944 |
T |
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