View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15053_low_24 (Length: 238)

Name: NF15053_low_24
Description: NF15053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15053_low_24
NF15053_low_24
[»] chr2 (1 HSPs)
chr2 (1-229)||(17988638-17988860)
[»] chr6 (15 HSPs)
chr6 (1-137)||(27587663-27587797)
chr6 (1-204)||(26061296-26061495)
chr6 (1-204)||(26081266-26081465)
chr6 (123-208)||(27702161-27702247)
chr6 (7-87)||(27599556-27599636)
chr6 (19-111)||(25514535-25514628)
chr6 (1-85)||(26808066-26808150)
chr6 (1-94)||(25488048-25488141)
chr6 (19-111)||(26146695-26146788)
chr6 (19-94)||(25986852-25986927)
chr6 (151-208)||(27584813-27584870)
chr6 (48-101)||(26910413-26910466)
chr6 (151-208)||(26974143-26974200)
chr6 (62-111)||(25548562-25548611)
chr6 (48-85)||(27584925-27584962)
[»] chr4 (1 HSPs)
chr4 (51-109)||(5083845-5083903)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 17988860 - 17988638
Alignment:
Q  1 ttgtttgaatttgatgctttcattactgtacgtttacaagcaaggattagcttgtagaatcaataccattgtagaagtacatgtaaattctggatgccaa 100  Q
    |||||||||||||||||||||||||||        ||||||| |||||||||||| || ||||||||||||||||||| ||||||||||||||| |||||    
T  17988860 ttgtttgaatttgatgctttcattact--------acaagcatggattagcttgtggagtcaataccattgtagaagttcatgtaaattctggaggccaa 17988769  T
Q  101 ccttggataataaatttctatgttttacgtgcttgtaaatatgtactgataaaagtaaatatcaggaacattgatgttgctaactt-ttttgttcaatga 199  Q
    | |||||||||  ||||  | |||||| ||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||| |||||||||||||    
T  17988768 ctttggataatgtatttgaacgttttatgtgcttgtaaatatgtactgataaaaccaaatatcaggaactttgatgttgctaactttttttgttcaatga 17988669  T
Q  200 ttgttga-ttctttgattatatagatgatgt 229  Q
    ||||||| || ||| |||||||| |||||||    
T  17988668 ttgttgattttttttattatataaatgatgt 17988638  T

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Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 27587797 - 27587663
Alignment:
Q  1 ttgtttgaatttgatgctttcattactgtacgtttacaagcaaggattagcttgtagaatcaataccattgtagaagtacatgtaaattctggatgccaa 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||| |||    
T  27587797 ttgtttgaatttgatgctttcattactgtatgtttacaagcaaggattagcttgtagaatcaatac--atgtagaagtacatgtaaattctggatggcaa 27587700  T
Q  101 ccttggataataaatttctatgttttacgtgcttgta 137  Q
    |||||||||||||||||||||||||||| ||||||||    
T  27587699 ccttggataataaatttctatgttttacttgcttgta 27587663  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 26061296 - 26061495
Alignment:
Q  1 ttgtttgaatttgatgctttcattactgtacgtttacaagcaaggattagcttgtagaatcaataccattgtagaagtacatgtaaattctggatgccaa 100  Q
    ||||||||||| |||  |||||||||||||| |||| | ||| | ||||| || |||||| || |||||| |||||||||||||||||| |||| |||||    
T  26061296 ttgtttgaattcgattatttcattactgtacatttagatgcatgcattagattatagaatgaacaccattttagaagtacatgtaaattatggaggccaa 26061395  T
Q  101 ccttggataa--taaatttctatgttttacgtgcttgtaaatatgtactgataaaagtaaatatcaggaacattgatgttgctaactttt-ttgttcaat 197  Q
    ||||||||||  || ||||  ||||||||      | ||||| ||| |||| |||||  |||||||||||| ||||| |||||||||||| |||||||||    
T  26061396 ccttggataatgtatatttgaatgtttta------tctaaatgtgttctga-aaaagccaatatcaggaactttgatcttgctaacttttgttgttcaat 26061488  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 26081266 - 26081465
Alignment:
Q  1 ttgtttgaatttgatgctttcattactgtacgtttacaagcaaggattagcttgtagaatcaataccattgtagaagtacatgtaaattctggatgccaa 100  Q
    ||||||||||| |||  |||||||||||||| |||| | ||| | ||||| || |||||| || |||||| |||||||||||||||||| |||| |||||    
T  26081266 ttgtttgaattcgattatttcattactgtacatttagatgcatgcattagattatagaatgaacaccattttagaagtacatgtaaattatggaggccaa 26081365  T
Q  101 ccttggataa--taaatttctatgttttacgtgcttgtaaatatgtactgataaaagtaaatatcaggaacattgatgttgctaactttt-ttgttcaat 197  Q
    ||||||||||  || ||||  ||||||||      | ||||| ||| |||| |||||  |||||||||||| ||||| |||||||||||| |||||||||    
T  26081366 ccttggataatgtatatttgaatgtttta------tctaaatgtgttctga-aaaagccaatatcaggaactttgatcttgctaacttttgttgttcaat 26081458  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 208
Target Start/End: Complemental strand, 27702247 - 27702161
Alignment:
Q  123 ttttacgtgcttgtaaatatgtactgataaaagtaaatatcaggaacattgatgttgctaac-ttttttgttcaatgattgttgatt 208  Q
    |||||| ||||||||||||||| |||| ||||| |||| ||||||||||||||||||| | | ||||||||||||||||||||||||    
T  27702247 ttttacctgcttgtaaatatgtcctgaaaaaagcaaatttcaggaacattgatgttgcaacctttttttgttcaatgattgttgatt 27702161  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 27599636 - 27599556
Alignment:
Q  7 gaatttgatgctttcattactgtacgtttacaagcaaggattagcttgtagaatcaataccattgtagaagtacatgtaaa 87  Q
    |||||||||||||||||||||||| ||||||||| | | | ||| |||| |||| ||||||||||||||||||||||||||    
T  27599636 gaatttgatgctttcattactgtaggtttacaagaatgcaataggttgtggaattaataccattgtagaagtacatgtaaa 27599556  T

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Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 25514535 - 25514628
Alignment:
Q  19 ttcattactgtacgtttacaagcaaggattagcttgtagaatcaataccattgtagaagtacatgtaaattc-tggatgccaaccttggataat 111  Q
    |||||||||||||||||  | ||| | ||||| || |||||| ||||||||| ||||||||||||||||||| |||| |||||||| |||||||    
T  25514535 ttcattactgtacgtttggaggcatgcattagattatagaatgaataccattttagaagtacatgtaaattcatggaggccaacctcggataat 25514628  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 26808066 - 26808150
Alignment:
Q  1 ttgtttgaatttgatgctttcattactgtacgtttacaagcaaggattagcttgtagaatcaataccattgtagaagtacatgta 85  Q
    |||||||||||| | | ||| |||| ||||||||||||| || | ||||||||||||||| |||| ||| |||||||||||||||    
T  26808066 ttgtttgaattttacgatttaattaatgtacgtttacaaacatgcattagcttgtagaatgaatagcatggtagaagtacatgta 26808150  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 25488048 - 25488141
Alignment:
Q  1 ttgtttgaatttgatgctttcattactgtacgtttacaagcaaggattagcttgtagaatcaataccattgtagaagtacatgtaaattctgga 94  Q
    ||||||||||| |||  |||||||||||||| |||| | ||| | ||||| || |||||| || |||||| |||||||||||||||||| ||||    
T  25488048 ttgtttgaattcgattatttcattactgtacatttagatgcatgcattagattatagaatgaacaccattttagaagtacatgtaaattatgga 25488141  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 26146695 - 26146788
Alignment:
Q  19 ttcattactgtacgtttacaagcaaggattagcttgtagaatcaataccattgtagaagtacatgtaaattc-tggatgccaaccttggataat 111  Q
    |||||||||||||||||  |  || | ||||| || |||||| ||||||||| ||||||||||||||||||| |||| |||||||| |||||||    
T  26146695 ttcattactgtacgtttggagacatgcattagattatagaatgaataccattttagaagtacatgtaaattcatggaggccaacctcggataat 26146788  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 25986852 - 25986927
Alignment:
Q  19 ttcattactgtacgtttacaagcaaggattagcttgtagaatcaataccattgtagaagtacatgtaaattctgga 94  Q
    |||||||||||||||||  | ||| | ||||| || |||||| ||||||||| |||||||||||||||||| ||||    
T  25986852 ttcattactgtacgtttggaggcatgcattagattatagaatgaataccattttagaagtacatgtaaattatgga 25986927  T

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Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 27584870 - 27584813
Alignment:
Q  151 aaaagtaaatatcaggaacattgatgttgctaactttt-ttgttcaatgattgttgatt 208  Q
    ||||| |||||||||||| |||||||| |||||||||| ||||||||||||||||||||    
T  27584870 aaaagcaaatatcaggaa-attgatgtagctaacttttgttgttcaatgattgttgatt 27584813  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 26910413 - 26910466
Alignment:
Q  48 tagcttgtagaatcaataccattgtagaagtacatgtaaattctggatgccaac 101  Q
    |||||||||||||||||| | |||||||||||||||||||  ||||| ||||||    
T  26910413 tagcttgtagaatcaataacgttgtagaagtacatgtaaaaactggaggccaac 26910466  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 26974143 - 26974200
Alignment:
Q  151 aaaagtaaatatcaggaacattgatgttgctaactttt-ttgttcaatgattgttgatt 208  Q
    ||||| |||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||    
T  26974143 aaaagcaaatataaggaa-attgatgttgctaacttttcttgttgaatgattgttgatt 26974200  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 25548562 - 25548611
Alignment:
Q  62 aataccattgtagaagtacatgtaaattctggatgccaaccttggataat 111  Q
    ||||||||| |||||||||||||||| | |||| |||||||| |||||||    
T  25548562 aataccattttagaagtacatgtaaaatatggaggccaacctcggataat 25548611  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 27584962 - 27584925
Alignment:
Q  48 tagcttgtagaatcaataccattgtagaagtacatgta 85  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  27584962 tagcttgtaaaatcaataccattgtagaagtacttgta 27584925  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 5083845 - 5083903
Alignment:
Q  51 cttgtagaatcaataccattgtagaagtacatgtaaattctggatgccaaccttggata 109  Q
    |||||| ||||||||||||||||||| ||| ||||||||| ||||| || |||||||||    
T  5083845 cttgtaaaatcaataccattgtagaaatacttgtaaattcaggatgtcatccttggata 5083903  T

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