View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15053_low_26 (Length: 220)
Name: NF15053_low_26
Description: NF15053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15053_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 206
Target Start/End: Original strand, 33095133 - 33095337
Alignment:
| Q |
2 |
ccaataacaccaccaaagacaccttctcctattatcaatcctcctaatgttccttatactcctccgaaagaaccttctcctggaaatcaaccaccatatg |
101 |
Q |
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| T |
33095133 |
ccaataacaccaccaaagacaccttctcctattatcaatcctcctaatgttccttatactcctccgaaaacaccttctcctgaaaatcaaccaccatatg |
33095232 |
T |
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| Q |
102 |
taccaataataccaccaaaaactccttctccaatctatagtcctccaaatactccttatacacctcccaaaagtactcctccctcacctaatcaacctcc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33095233 |
taccaataataccaccaaaaactccttctccaatctatagtcctcctaatactccttatacacctcccaaaagtactcctccctcacctaatcaacctcc |
33095332 |
T |
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| Q |
202 |
ctatg |
206 |
Q |
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||||| |
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| T |
33095333 |
ctatg |
33095337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 33095343 - 33095467
Alignment:
| Q |
8 |
acaccaccaaagacaccttctcctattatcaatcctcctaatgttccttatactcctccgaaagaaccttctcctggaaatcaaccaccatatgtaccaa |
107 |
Q |
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||||| ||||| || ||||| |||||| ||||||||| |||||||||||||||||||| ||| ||| |||||| | ||||||||||| |||||||||| |
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| T |
33095343 |
acacctccaaaaactccttcacctatttacaatcctccaaatgttccttatactcctccaaaaacaccatctcctcgcaatcaaccaccttatgtaccaa |
33095442 |
T |
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| Q |
108 |
taataccaccaaaaactccttctcc |
132 |
Q |
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| | ||||||||||||||||||||| |
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| T |
33095443 |
ttacaccaccaaaaactccttctcc |
33095467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 132
Target Start/End: Original strand, 33095039 - 33095161
Alignment:
| Q |
10 |
accaccaaagacaccttctcctattatcaatcctcctaatgttccttatactcctccgaaagaaccttctcctggaaatcaaccaccatatgtaccaata |
109 |
Q |
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| T |
33095039 |
accacctaaaacaccttcacctattcatagtcctcccaatgttccctatactcctccaaaggtaccttctcctggaaatcaaccaccatatgtgccaata |
33095138 |
T |
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| Q |
110 |
ataccaccaaaaactccttctcc |
132 |
Q |
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| T |
33095139 |
acaccaccaaagacaccttctcc |
33095161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 33095439 - 33095501
Alignment:
| Q |
2 |
ccaataacaccaccaaagacaccttctcctattatcaatcctcctaatgttccttatactcct |
64 |
Q |
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||||| ||||||||||| || |||||||||||| || ||||||||||||||| ||||||||| |
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| T |
33095439 |
ccaattacaccaccaaaaactccttctcctattcacactcctcctaatgttccatatactcct |
33095501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 33103722 - 33103765
Alignment:
| Q |
86 |
aatcaaccaccatatgtaccaataataccaccaaaaactccttc |
129 |
Q |
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||||||||||||||||| ||||| | |||||||||||||||||| |
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| T |
33103722 |
aatcaaccaccatatgtgccaattacaccaccaaaaactccttc |
33103765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 33103812 - 33103858
Alignment:
| Q |
86 |
aatcaaccaccatatgtaccaataataccaccaaaaactccttctcc |
132 |
Q |
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||||||||||| ||||| ||||| | ||||||||||||||||||||| |
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| T |
33103812 |
aatcaaccaccttatgttccaattacaccaccaaaaactccttctcc |
33103858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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