View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15053_low_3 (Length: 470)
Name: NF15053_low_3
Description: NF15053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15053_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 108 - 455
Target Start/End: Original strand, 613184 - 613553
Alignment:
| Q |
108 |
cttatgcatagtaatttcctttgcgcaccatagaattagcacatgatcatcgatatagtattattacagctcga----tgattgcagttggattagtgtt |
203 |
Q |
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| T |
613184 |
cttatgcatagtaatttcctttgcgcaccatagaattagcacatgatcatcgatatagtattattacagctcgatcgatgattgcagttggattagtgtt |
613283 |
T |
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| Q |
204 |
ttgcatatttattattttccaaacaaggcatctcttctcttcatatccaaaggaggaaagtctggcccagccactaccctaatatgtacggatatctcgt |
303 |
Q |
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| T |
613284 |
ttgcatatttattattttccaaacaaggcatctcttctcttcatacccaaaggaggaaagtctggcccagccactaccctaatatgtacggatatctcgt |
613383 |
T |
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| Q |
304 |
aaagacatgtacaaaagcaaaagccata---------------tgattctccact-aattataaggacatcactttgcca--ttcgtctaagcttaacca |
385 |
Q |
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| T |
613384 |
aaagacatgtacaaaagcaaaagccatatgaaaaggaaatgagtgattctccactaaattataaggacatcactttgacaccgtcgtctaagcttaacca |
613483 |
T |
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| Q |
386 |
atgaatcttaaacaagttttttagatagtaaaggttaatgcctcatctttggtcgattgatctttctcat |
455 |
Q |
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| T |
613484 |
atgaatcttaaacaagttttttagatagtaaaggttaatgcctcatctttggtcgattgatctttctcat |
613553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 612943 - 613032
Alignment:
| Q |
1 |
taagttttttgaagcaaaatgatctacgggtcattgttagggttatctgagagtcttgttcttcatctttgtgtaaagtctaaatgtttt |
90 |
Q |
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| T |
612943 |
taagtttttttaagcaaaatgatctacgggtcattgttagggttatctgagtgtcttgttcttcatctttgtgagaagtctaattgtttt |
613032 |
T |
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