View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15053_low_4 (Length: 459)
Name: NF15053_low_4
Description: NF15053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15053_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 6 - 442
Target Start/End: Original strand, 25642975 - 25643397
Alignment:
| Q |
6 |
atataatccacccgataaacttaaatatgtgttcacaagtagacctatctagttacaagccaactgatagtcatcggttcttaaatcaagtaaatttatt |
105 |
Q |
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| T |
25642975 |
atataatccacctgataaacttaaatatgtgttcacaagtagacctatctagttccaagccaactgataggcatcggttcttaaatcgtgtaaatttatt |
25643074 |
T |
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| Q |
106 |
tattcactcatttatgtattttgcttaagatgatgcccatagaaaatgatttaaacaaatactttgattatatgataaa-taaaatacacagtagcagca |
204 |
Q |
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| T |
25643075 |
tata--------tatgtattacgcttaagaagatgcatatagaaaatgatttaaacatatacttcgggcatatgataaaataaaatacacagtagcagca |
25643166 |
T |
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| Q |
205 |
gaaacaagctcacctgtgcaaagagctctgaagttttctgcaaaaaggaacatcaaaacaaggctttagataaagctaatgatgtaatgtaagaaccaat |
304 |
Q |
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| T |
25643167 |
gaaacaagctcacctgtgcaaagagctctgaagttttctgcaaaaaggaacatcataacaacgatttagataaagctaatgatgtaatgtaagaaccaat |
25643266 |
T |
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| Q |
305 |
aatgtacagagtatttgaaaaccttacctgcggtttttggaactgtcttcccaaaaagacctattacaacacggcctggaaaatcaagaataacagcatc |
404 |
Q |
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| T |
25643267 |
aatgtacagagtatttgaaaaccttacctgctgtttttggaactgtcttcccaaaaagacctattacaacacgacctgaaaaatcaagaat------atc |
25643360 |
T |
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| Q |
405 |
agaacccattacataccaaactagaatttccctcattt |
442 |
Q |
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| T |
25643361 |
agaacccattacataccaaactagaa-ttccctcattt |
25643397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 25619202 - 25619352
Alignment:
| Q |
20 |
ataaacttaaatatgtgttcacaagtagacctatctagttacaagccaactgatagtcatcggttcttaaatcaagtaaatttatttattcactcattta |
119 |
Q |
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|||||||| | ||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
25619202 |
ataaactttattatgttttcataagtagacctatctcgttacaagccaactgatagtcatcggttcttaaatcgagtaaatttatttattcgctcatttc |
25619301 |
T |
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| Q |
120 |
tgtattttgcttaagatgatgcccatagaaaatgatttaaacaaatacttt |
170 |
Q |
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||| || |||||||||||| |||||||||||||||||||||||||||| |
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| T |
25619302 |
tgtgttaaacttaagatgatgaacatagaaaatgatttaaacaaatacttt |
25619352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 25632778 - 25632948
Alignment:
| Q |
4 |
gcatataatccacccgataaacttaaatatgtgttcacaagtagacctatctagttacaagccaactgatagtcatcggttcttaaatcaagtaaattta |
103 |
Q |
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|||||||||||||| |||||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||| | |
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| T |
25632778 |
gcatataatccacctgataaacttatttatgttttcataagtagacctatctagtcacaagccaacaaatagtcatcggttcttaaatcgagtaa----a |
25632873 |
T |
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| Q |
104 |
tttattcactcatttatgtattttg------cttaagatgatgcccatagaaaatgatttaaacaaatactttgat |
173 |
Q |
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||||||| ||| ||| | | ||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25632874 |
tttattccctc-ttttttttttttgagtaaacttaagatgatgcatatagaaaatgatttaaacaaatactttgat |
25632948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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