View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15053_low_6 (Length: 443)

Name: NF15053_low_6
Description: NF15053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15053_low_6
NF15053_low_6
[»] chr7 (10 HSPs)
chr7 (18-251)||(12413890-12414123)
chr7 (325-434)||(12413716-12413825)
chr7 (348-431)||(18091975-18092058)
chr7 (348-431)||(18061898-18061981)
chr7 (156-249)||(20396188-20396281)
chr7 (348-431)||(20396009-20396095)
chr7 (348-431)||(18123948-18124031)
chr7 (156-246)||(18123745-18123835)
chr7 (170-251)||(18091785-18091866)
chr7 (170-251)||(18061708-18061789)
[»] scaffold0108 (2 HSPs)
scaffold0108 (338-432)||(15843-15937)
scaffold0108 (150-246)||(16036-16132)


Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 12414123 - 12413890
Alignment:
Q  18 gatgaaactatatagtgtcttgtgcagactaatttgcaatattaacatttattcacaagaaaattcgctagaagcagcatttccctaacatttaatcaaa 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12414123 gatgaaactctatagtgtcttgtgcagactaatttgcaatattaacatttattcacaagaaaattcgctagaagcagtatttccctaacatttaatcaaa 12414024  T
Q  118 tgttttgaaaattgaatagcaagatgagatgagattaattacacaatgctgcgatttaagaagccaccaaacttttgttgaaggccaagcgggtagtcaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  12414023 tgttttgaaaattgaatagcaagatgagatgagattaattacacaatgctgcgatttaagaaaccaccaaacttttgttgaagggcaagcgggtagtcaa 12413924  T
Q  218 aatgcatgatagtcacaaaaggctcaatacctac 251  Q
    ||||||||||||||||||||||||||||||||||    
T  12413923 aatgcatgatagtcacaaaaggctcaatacctac 12413890  T

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Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 325 - 434
Target Start/End: Complemental strand, 12413825 - 12413716
Alignment:
Q  325 aaggaatgtggtcggtttaatctataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttgtttatcccccctctcaaggt 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12413825 aaggaatgtggtcggtttaatctataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttatttatcccccctctcaaggt 12413726  T
Q  425 tccatctgtg 434  Q
    ||||||||||    
T  12413725 tccatctgtg 12413716  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 348 - 431
Target Start/End: Original strand, 18091975 - 18092058
Alignment:
Q  348 ataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttgtttatcccccctctcaaggttccatct 431  Q
    |||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||    
T  18091975 ataccattgttgagtaactcgttgatcaaattgttgtagaagttgataccttctttgtttatacctcctttcaaggttccatct 18092058  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 348 - 431
Target Start/End: Original strand, 18061898 - 18061981
Alignment:
Q  348 ataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttgtttatcccccctctcaaggttccatct 431  Q
    |||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||| || ||| | ||||||||||||    
T  18061898 ataccattgttgagtaactcgttgatcaaattgttgtagaagttgataccttctttgtttatacctccttttaaggttccatct 18061981  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 249
Target Start/End: Complemental strand, 20396281 - 20396188
Alignment:
Q  156 ttacacaatgctgcgatttaagaagccaccaaacttttgttgaaggccaagcgggtagtcaaaatgcatgatagtcacaaaaggctcaatacct 249  Q
    ||||||||||  ||||||||||||||| ||||  |||||||||||  | |  || |||||||| |||| ||||||||||||||| |||||||||    
T  20396281 ttacacaatggagcgatttaagaagccgccaatattttgttgaagagctaatggatagtcaaagtgcaggatagtcacaaaaggttcaatacct 20396188  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 431
Target Start/End: Complemental strand, 20396095 - 20396009
Alignment:
Q  348 ataccatttttaagtaattcattgatcaaattgttgtagaag---ttgataccttctttgtttatcccccctctcaaggttccatct 431  Q
    |||||||| || ||||| || |||||||||||||||||||||   | |||||||||||||||||| || ||| | ||||||||||||    
T  20396095 ataccattgttgagtaactcgttgatcaaattgttgtagaagaagtcgataccttctttgtttatacctccttttaaggttccatct 20396009  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 431
Target Start/End: Original strand, 18123948 - 18124031
Alignment:
Q  348 ataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttgtttatcccccctctcaaggttccatct 431  Q
    |||||||| || ||||| || |||||||||||||||||||| | |||||||||||| ||||  || ||| | ||||||||||||    
T  18123948 ataccattgttgagtaactcgttgatcaaattgttgtagaactcgataccttctttatttacacctccttttaaggttccatct 18124031  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 18123745 - 18123835
Alignment:
Q  156 ttacacaatgctgcgatttaagaagccaccaaacttttgttgaaggccaagcgggtagtcaaaatgcatgatagtcacaaaaggctcaata 246  Q
    ||||||||||  ||||||||||||||| ||||  |||||||||||  | |  || |||||||| |||| ||||||||||||||| ||||||    
T  18123745 ttacacaatggagcgatttaagaagccgccaatattttgttgaagagctaatggatagtcaaagtgcaggatagtcacaaaaggttcaata 18123835  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 18091785 - 18091866
Alignment:
Q  170 gatttaagaagccaccaaacttttgttgaaggccaagcgggtagtcaaaatgcatgatagtcacaaaaggctcaatacctac 251  Q
    |||||||||||||||||||||||| ||||||  | |  || |||||||  ||||  |||||||||||||| |||||||||||    
T  18091785 gatttaagaagccaccaaactttttttgaagagctaatggatagtcaaggtgcaatatagtcacaaaaggttcaatacctac 18091866  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 18061708 - 18061789
Alignment:
Q  170 gatttaagaagccaccaaacttttgttgaaggccaagcgggtagtcaaaatgcatgatagtcacaaaaggctcaatacctac 251  Q
    ||||| |||||||||||||||||| ||||||  | |  || |||||||  ||||  |||||||||||||| |||||||||||    
T  18061708 gatttgagaagccaccaaactttttttgaagagctaatggatagtcaaggtgcaatatagtcacaaaaggttcaatacctac 18061789  T

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Target: scaffold0108 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 15937 - 15843
Alignment:
Q  338 ggtttaatctataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttgtttatcccccctctcaaggttccatctg 432  Q
    ||||| ||| |||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||| |||||||||||||||    
T  15937 ggtttgatccataccattttcaagtaagtcattgatcaaattgttgtagaagttgatgccttctttgtttatacctcctttcaaggttccatctg 15843  T

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Target: scaffold0108; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 150 - 246
Target Start/End: Complemental strand, 16132 - 16036
Alignment:
Q  150 gattaattacacaatgctgcgatttaagaagccaccaaacttttgttgaaggccaagcgggtagtcaaaatgcatgatagtcacaaaaggctcaata 246  Q
    |||||||||||||||  |||||||||||||||| | || |||||| |||||| | || |||||||||||||||||||||||||||||||||||||||    
T  16132 gattaattacacaatagtgcgatttaagaagccgcgaagcttttggtgaagggctagtgggtagtcaaaatgcatgatagtcacaaaaggctcaata 16036  T

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