View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15053_low_7 (Length: 434)
Name: NF15053_low_7
Description: NF15053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15053_low_7 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 33094692 - 33095125
Alignment:
| Q |
1 |
gttccaagtcaatgatattcttggtaagtttaatttcaattaatgcaaaaatttatttttgatttgcttgtgaactagattttaattatgannnnnnngt |
100 |
Q |
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| T |
33094692 |
gttccaagtcaatgatattcttggtaagtttaatttcatttaatgcaaaaatctatttttgatttgcttgtgagatagattttaataatgaatttcttgt |
33094791 |
T |
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| Q |
101 |
gtactatagtttttaagtacaagaaggactcaaactcagtgttagtggtgaacaaggaagattatgataaatgcaacaaaaagtacccgatcaagaaatt |
200 |
Q |
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| T |
33094792 |
gtactatagtttttaagtacaagaaggactcaaattcagtgttagtggtgaacaaggaagattatgataaatgcaacaaaaagtatccgatcaagaaatt |
33094891 |
T |
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| Q |
201 |
tgatgatggtgattctgagtttcaacttgatagatctggtcctttttatttcattagtggaaaagatgataattgtgaaaaaggtcaaaaactaattgtt |
300 |
Q |
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| T |
33094892 |
tgatgatggtgattctgagtttcaacttgatagatctggtcctttttatttcattagtggaaaagatgataattgtgaaaaaggtcaaaaactaattgtt |
33094991 |
T |
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| Q |
301 |
gtggtgctggctgtgagaaaaaattctcctccctatgttccaattatacctcctaaaacaccttcacctattcatagtcctcccaatgttccctatactc |
400 |
Q |
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| T |
33094992 |
gtggtgctggctgtgagaaaaatatctcctccctatgttccaattataccacctaaaacaccttcacctattcatagtcctcccaatgttccctatactc |
33095091 |
T |
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| Q |
401 |
ctccaaaggtaccttctcctggaaatcaaccacc |
434 |
Q |
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| T |
33095092 |
ctccaaaggtaccttctcctggaaatcaaccacc |
33095125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 434
Target Start/End: Original strand, 33095328 - 33095431
Alignment:
| Q |
328 |
cctccctatgttccaattatacctcctaaaacaccttcacctattcatagtcctcccaatgttccctatactcctccaaaggtaccttctcctggaaatc |
427 |
Q |
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| T |
33095328 |
cctccctatgttcc---tacacctccaaaaactccttcacctatttacaatcctccaaatgttccttatactcctccaaaaacaccatctcctcgcaatc |
33095424 |
T |
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| Q |
428 |
aaccacc |
434 |
Q |
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||||||| |
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| T |
33095425 |
aaccacc |
33095431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 33095171 - 33095227
Alignment:
| Q |
378 |
tcctcccaatgttccctatactcctccaaaggtaccttctcctggaaatcaaccacc |
434 |
Q |
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| T |
33095171 |
tcctcctaatgttccttatactcctccgaaaacaccttctcctgaaaatcaaccacc |
33095227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 402
Target Start/End: Original strand, 33103734 - 33103802
Alignment:
| Q |
334 |
tatgttccaattatacctcctaaaacaccttcacctattcatagtcctcccaatgttccctatactcct |
402 |
Q |
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| T |
33103734 |
tatgtgccaattacaccaccaaaaactccttcacctattcatgcccctcctaatgttccttatactcct |
33103802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 212
Target Start/End: Complemental strand, 22213619 - 22213514
Alignment:
| Q |
107 |
tagtttttaagtacaagaaggactcaaactcagtgttagtggtgaacaaggaagattatgataaatgcaacaaaaagtacccgatcaagaaatttgatga |
206 |
Q |
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||||||| ||||||||||||| ||| |||| ||||| | ||||| || ||||||||||| || |||||||||| |||| |||||||| || || || |
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| T |
22213619 |
tagttttcaagtacaagaagggttcagactcggtgttggaagtgaagaaagaagattatgaaaagtgcaacaaaacaaacccaatcaagaagttcgaaga |
22213520 |
T |
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| Q |
207 |
tggtga |
212 |
Q |
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|||||| |
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| T |
22213519 |
tggtga |
22213514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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