View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15054_high_1 (Length: 535)

Name: NF15054_high_1
Description: NF15054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15054_high_1
NF15054_high_1
[»] chr3 (2 HSPs)
chr3 (18-523)||(26452896-26453413)
chr3 (466-535)||(26452805-26452874)
[»] chr4 (11 HSPs)
chr4 (300-443)||(23676325-23676469)
chr4 (445-535)||(21538924-21539014)
chr4 (461-528)||(5979786-5979853)
chr4 (445-535)||(4873037-4873127)
chr4 (461-535)||(3703584-3703658)
chr4 (460-502)||(12329026-12329068)
chr4 (455-501)||(21538844-21538890)
chr4 (461-503)||(25812263-25812305)
chr4 (450-487)||(2605367-2605404)
chr4 (480-525)||(48292387-48292432)
chr4 (460-501)||(53860895-53860936)
[»] chr1 (7 HSPs)
chr1 (140-197)||(47680531-47680588)
chr1 (444-528)||(49632910-49632995)
chr1 (467-501)||(11985458-11985492)
chr1 (445-535)||(30018564-30018653)
chr1 (28-110)||(47680406-47680488)
chr1 (450-502)||(30018687-30018740)
chr1 (445-525)||(36724171-36724251)
[»] chr8 (2 HSPs)
chr8 (445-535)||(25939281-25939371)
chr8 (454-502)||(9040955-9041003)
[»] scaffold0110 (2 HSPs)
scaffold0110 (445-523)||(11425-11503)
scaffold0110 (445-523)||(19162-19240)
[»] chr7 (5 HSPs)
chr7 (466-535)||(27866683-27866752)
chr7 (450-494)||(36390712-36390756)
chr7 (461-535)||(48073016-48073090)
chr7 (471-523)||(27747373-27747425)
chr7 (466-498)||(39933632-39933664)
[»] chr6 (4 HSPs)
chr6 (467-523)||(30351451-30351507)
chr6 (454-501)||(13613749-13613796)
chr6 (461-528)||(16396652-16396719)
chr6 (445-535)||(3806174-3806263)
[»] chr5 (10 HSPs)
chr5 (450-502)||(10818875-10818927)
chr5 (445-504)||(10818787-10818845)
chr5 (445-535)||(14613533-14613623)
chr5 (464-509)||(4639521-4639566)
chr5 (445-528)||(28976687-28976770)
chr5 (461-535)||(6706273-6706347)
chr5 (448-501)||(4192001-4192054)
chr5 (450-502)||(8367019-8367071)
chr5 (178-206)||(11727230-11727258)
chr5 (461-501)||(35924595-35924635)
[»] chr2 (3 HSPs)
chr2 (450-532)||(13793669-13793751)
chr2 (454-502)||(37096596-37096644)
chr2 (466-535)||(39994520-39994590)


Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Complemental strand, 26453413 - 26452896
Alignment:
Q  18 agaaaaagtacagaaaaggtaagaaaagcagtgagagaagaggtatattggaaaatgagagaagaaatatgaggagcctacataaagtaaaat------- 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  26453413 agaaaaagtacagaaaaggtaagaaaagcagagagagaagaggtatattggaaaatgagagaagaaatatgaggagcctacataaagtaaaataggaagt 26453314  T
Q  111 -----gagttctagcattggagnnnnnnnttcagtggttgttaaatcctacatggcatacttggacccacaatttagcagctaagaacaaaaaatttgtt 205  Q
         |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26453313 gtgttgagttctagcattggagaaaaaaattcagtggttgttaaatcctacatggcatacttggacccacaatttagcagctaagaacaaaatatttgtt 26453214  T
Q  206 ccagtgctttagaagctctaagattgatcggcacacccctttccattgctcagcctatcagatcgtaacttctgctaaacaannnnnnnnctttaaagtt 305  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||        ||||||||||    
T  26453213 ccagtgctttagaagctccaagattgatcggcacacccctttccattgttcagcctatcagatcgtaacttctgctaaacaattttttttctttaaagtt 26453114  T
Q  306 ggaccatattataggattcaatgcttgtttttctcaccccatgtgaaattttaacaattcacagggtccgtgagcatttacccttaagtcagtgatggga 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26453113 ggaccatattataggattcaatgcttgtttttctcaccccatgtgaaattttaacaattcacggggtccgtgagcatttacccttaagtcagtgatggga 26453014  T
Q  406 gacaacagcacacaaagcccagtaggacaaaaataaagcgagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacacc 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||||||||||||||| ||     
T  26453013 gacaacagcacacaaagcccagtaggacaaaaataaagcgagaattgttttttggacatccattatttcctagaaacacatgaaaatgaccaaaaatact 26452914  T
Q  506 ccagcaatagttaactac 523  Q
    ||||||||||||||||||    
T  26452913 ccagcaatagttaactac 26452896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 466 - 535
Target Start/End: Original strand, 26452805 - 26452874
Alignment:
Q  466 cattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26452805 cattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 26452874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 300 - 443
Target Start/End: Original strand, 23676325 - 23676469
Alignment:
Q  300 aaagttggaccatattataggattcaatgcttgtttttctcaccccatgtgaaattttaa-caattcacagggtccgtgagcatttacccttaagtcagt 398  Q
    |||| ||||| | ||| |||||||||||||||||||||||||| |||||||||||||||| |||||||  ||||||||||||||||||| | ||||||||    
T  23676325 aaaggtggactaaattctaggattcaatgcttgtttttctcactccatgtgaaattttaagcaattcaaggggtccgtgagcatttaccgtcaagtcagt 23676424  T
Q  399 gatgggagacaacagcacacaaagcccagtaggacaaaaataaag 443  Q
    ||||||||||| ||||||| ||| |||||||||||||||||||||    
T  23676425 gatgggagacaccagcacagaaatcccagtaggacaaaaataaag 23676469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 445 - 535
Target Start/End: Complemental strand, 21539014 - 21538924
Alignment:
Q  445 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 535  Q
    ||||||||||||||  || |||| ||||| ||||||||||| | ||||||||||||||||||||    ||||||| |||||||||||||||    
T  21539014 gagaattgctttttaaactttcaatgtttcctagaaacacaaggaaatgaccaaaaacaccccaatggtagttaattaccgctggcttata 21538924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 461 - 528
Target Start/End: Complemental strand, 5979853 - 5979786
Alignment:
Q  461 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctg 528  Q
    |||||||||||||  |||||||| ||| |||||||||||||||||||| |  ||||||||||||||||    
T  5979853 acattcattgtttcttagaaacaaatggaaatgaccaaaaacaccccaacggtagttaactaccgctg 5979786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 445 - 535
Target Start/End: Original strand, 4873037 - 4873127
Alignment:
Q  445 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 535  Q
    ||||||| |||||| ||| | |||| ||||||| ||||||||| |||||| |||||||||  ||||  |||||||||||||||| ||||||    
T  4873037 gagaatttcttttttgacttccattattttctaaaaacacatggaaatgatcaaaaacacttcagcggtagttaactaccgctgacttata 4873127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 535
Target Start/End: Original strand, 3703584 - 3703658
Alignment:
Q  461 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 535  Q
    |||| ||||||||| ||||||||||||||||||||||||||  |  ||||  ||||||||||||| || ||||||    
T  3703584 acatccattgttttttagaaacacatgaaaatgaccaaaaaatcatcagcggtagttaactaccgttgacttata 3703658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 502
Target Start/End: Complemental strand, 12329068 - 12329026
Alignment:
Q  460 gacattcattgttttctagaaacacatgaaaatgaccaaaaac 502  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||    
T  12329068 gacatccattgttttttagaaacacatgaaaatgatcaaaaac 12329026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 501
Target Start/End: Original strand, 21538844 - 21538890
Alignment:
Q  455 ttttggacattcattgttttctagaaacacatgaaaatgaccaaaaa 501  Q
    |||| ||||| |||||||||||||||||||||| |||| ||||||||    
T  21538844 tttttgacatccattgttttctagaaacacatggaaataaccaaaaa 21538890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 503
Target Start/End: Original strand, 25812263 - 25812305
Alignment:
Q  461 acattcattgttttctagaaacacatgaaaatgaccaaaaaca 503  Q
    |||| |||||||||||||||||||||| |||||| ||||||||    
T  25812263 acatccattgttttctagaaacacatggaaatgatcaaaaaca 25812305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 487
Target Start/End: Original strand, 2605367 - 2605404
Alignment:
Q  450 ttgctttttggacattcattgttttctagaaacacatg 487  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  2605367 ttgcttttttgacattcattgtttcctagaaacacatg 2605404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 525
Target Start/End: Complemental strand, 48292432 - 48292387
Alignment:
Q  480 aacacatgaaaatgaccaaaaacaccccagcaatagttaactaccg 525  Q
    |||||||| |||||||||||||||| |||||  |||||||||||||    
T  48292432 aacacatgtaaatgaccaaaaacactccagcggtagttaactaccg 48292387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 501
Target Start/End: Complemental strand, 53860936 - 53860895
Alignment:
Q  460 gacattcattgttttctagaaacacatgaaaatgaccaaaaa 501  Q
    ||||| |||||||| ||||||||||||| |||||||||||||    
T  53860936 gacatccattgtttcctagaaacacatggaaatgaccaaaaa 53860895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 47680531 - 47680588
Alignment:
Q  140 tggttgttaaatcctacatggcatacttggacccacaatttagcagctaagaacaaaa 197  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  47680531 tggttgttaaatcctacatggcatacttggacccaatatttagcagctaagaacaaaa 47680588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 444 - 528
Target Start/End: Complemental strand, 49632995 - 49632910
Alignment:
Q  444 cgagaattgctttttg-gacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctg 528  Q
    |||||||||||||||  ||||| ||||| |||||||||||||||| ||||||||||||||| ||  |   ||||||||||||||||    
T  49632995 cgagaattgctttttttgacatccattgatttctagaaacacatggaaatgaccaaaaacatcctcgtggtagttaactaccgctg 49632910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 501
Target Start/End: Original strand, 11985458 - 11985492
Alignment:
Q  467 attgttttctagaaacacatgaaaatgaccaaaaa 501  Q
    |||||||||||||||||||||||||||||||||||    
T  11985458 attgttttctagaaacacatgaaaatgaccaaaaa 11985492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 535
Target Start/End: Original strand, 30018564 - 30018653
Alignment:
Q  445 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 535  Q
    ||||||||||||||| |||  |||||||| |||||| | ||||||||||| ||||||||| | |||  |||||||||| |||  |||||||    
T  30018564 gagaattgctttttg-acaaccattgtttcctagaagcgcatgaaaatgatcaaaaacactcaagcggtagttaactatcgcgtgcttata 30018653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 47680406 - 47680488
Alignment:
Q  28 cagaaaaggtaagaaaagcagtgagagaagaggtatattggaaaatgagagaagaaatatgaggagcctacataaagtaaaat 110  Q
    ||||||| |||||| |||  | ||||||||||||||| ||||  || |||||||||| | ||||  |||||||||||||||||    
T  47680406 cagaaaaagtaagagaaggggagagagaagaggtataatggatgataagagaagaaacacgagggtcctacataaagtaaaat 47680488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 30018740 - 30018687
Alignment:
Q  450 ttgctttttggacattcattgttttctagaaa-cacatgaaaatgaccaaaaac 502  Q
    ||||||||| ||||| |||||||| ||||||| |||||| ||||||||||||||    
T  30018740 ttgcttttttgacatccattgtttcctagaaaacacatggaaatgaccaaaaac 30018687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 525
Target Start/End: Original strand, 36724171 - 36724251
Alignment:
Q  445 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccg 525  Q
    ||||||| ||||||  |||||  ||||||||||||| |  ||| ||||||||||||||| |||||   |||||||||||||    
T  36724171 gagaattcctttttttacatttgttgttttctagaagcgtatggaaatgaccaaaaacatcccagtggtagttaactaccg 36724251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 445 - 535
Target Start/End: Original strand, 25939281 - 25939371
Alignment:
Q  445 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 535  Q
    |||||||| |||||| | ||||||||||| ||||||||| ||| ||| |||||||||||| | |||  |||||||||||||||||||||||    
T  25939281 gagaattgttttttgaatattcattgtttcctagaaacatatggaaaagaccaaaaacacacaagcggtagttaactaccgctggcttata 25939371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 9041003 - 9040955
Alignment:
Q  454 tttttggacattcattgttttctagaaacacatgaaaatgaccaaaaac 502  Q
    ||||| |||||||||||||| ||||||||||||| ||||||| ||||||    
T  9041003 ttttttgacattcattgtttcctagaaacacatggaaatgactaaaaac 9040955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 445 - 523
Target Start/End: Original strand, 11425 - 11503
Alignment:
Q  445 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactac 523  Q
    ||||||||||||||  ||||| ||||||| ||||||||| |||||||||||||||||||  |||||  |||||||||||    
T  11425 gagaattgcttttttcacattgattgtttcctagaaacatatgaaaatgaccaaaaacattccagctgtagttaactac 11503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 445 - 523
Target Start/End: Original strand, 19162 - 19240
Alignment:
Q  445 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactac 523  Q
    ||||||||||||||  ||||| ||||||| ||||||||| |||||||||||||||||||  |||||  |||||||||||    
T  19162 gagaattgcttttttcacattgattgtttcctagaaacatatgaaaatgaccaaaaacattccagctgtagttaactac 19240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 466 - 535
Target Start/End: Complemental strand, 27866752 - 27866683
Alignment:
Q  466 cattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 535  Q
    |||||||| ||||||||| |||||||||||| |||||| || | | ||||||||||||||||| ||||||    
T  27866752 cattgtttcctagaaacatatgaaaatgaccgaaaacaaccgaacgatagttaactaccgctgacttata 27866683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 494
Target Start/End: Original strand, 36390712 - 36390756
Alignment:
Q  450 ttgctttttggacattcattgttttctagaaacacatgaaaatga 494  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||    
T  36390712 ttgcttttttgacatttagtgttttctagaaacacatgaaaatga 36390756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 535
Target Start/End: Original strand, 48073016 - 48073090
Alignment:
Q  461 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 535  Q
    |||||| ||||||  |||||||||||| ||||||||||||| || | ||| |||||||||||   ||||||||||    
T  48073016 acattctttgtttattagaaacacatggaaatgaccaaaaatactctagcgatagttaactattactggcttata 48073090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 471 - 523
Target Start/End: Original strand, 27747373 - 27747425
Alignment:
Q  471 ttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactac 523  Q
    ||||||||||||||||||||||||| ||||| | | ||||  |||||||||||    
T  27747373 ttttctagaaacacatgaaaatgactaaaaataactcagcggtagttaactac 27747425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 498
Target Start/End: Complemental strand, 39933664 - 39933632
Alignment:
Q  466 cattgttttctagaaacacatgaaaatgaccaa 498  Q
    |||| ||||||||||||||||||||||||||||    
T  39933664 cattattttctagaaacacatgaaaatgaccaa 39933632  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 467 - 523
Target Start/End: Original strand, 30351451 - 30351507
Alignment:
Q  467 attgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactac 523  Q
    ||||||| ||||||||| |||||||||||||||||||||||| |  |||||||||||    
T  30351451 attgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactac 30351507  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 454 - 501
Target Start/End: Original strand, 13613749 - 13613796
Alignment:
Q  454 tttttggacattcattgttttctagaaacacatgaaaatgaccaaaaa 501  Q
    ||||| |||||  |||||||||||||||||||||||||||||||||||    
T  13613749 tttttcgacatctattgttttctagaaacacatgaaaatgaccaaaaa 13613796  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 461 - 528
Target Start/End: Complemental strand, 16396719 - 16396652
Alignment:
Q  461 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctg 528  Q
    |||| ||||||||| |||||| || |||||||||| |||||||||||| |  ||||||||||||||||    
T  16396719 acatccattgttttttagaaatacgtgaaaatgactaaaaacaccccaacggtagttaactaccgctg 16396652  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 535
Target Start/End: Original strand, 3806174 - 3806263
Alignment:
Q  445 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 535  Q
    |||||||||||||   |||| ||| ||||||||||||||||| |||| ||||||||||| |||| ||||| | |||||| |||| ||||||    
T  3806174 gagaattgcttttgtcacatccatcgttttctagaaacacat-aaaaagaccaaaaacatcccaacaataatcaactacagctgacttata 3806263  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 10818927 - 10818875
Alignment:
Q  450 ttgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaac 502  Q
    ||||||||| ||||| |||||||||||| ||||||||| ||||||||||||||    
T  10818927 ttgcttttttgacatccattgttttctaaaaacacatggaaatgaccaaaaac 10818875  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 504
Target Start/End: Original strand, 10818787 - 10818845
Alignment:
Q  445 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacac 504  Q
    ||||||||||||||  |||| ||||||||||||||||||||| ||||| |||||||||||    
T  10818787 gagaattgcttttttaacat-cattgttttctagaaacacattaaaattaccaaaaacac 10818845  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 535
Target Start/End: Original strand, 14613533 - 14613623
Alignment:
Q  445 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 535  Q
    |||||||||||||    ||| |||||||| |||||||||||||||||| ||||||||||| ||| |  |||||| | || |||||||||||    
T  14613533 gagaattgcttttctcgcatccattgtttcctagaaacacatgaaaataaccaaaaacactccaacggtagttagccactgctggcttata 14613623  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 464 - 509
Target Start/End: Complemental strand, 4639566 - 4639521
Alignment:
Q  464 ttcattgttttctagaaacacatgaaaatgaccaaaaacaccccag 509  Q
    ||||||||||  ||||||||||||||||||| ||||||||||||||    
T  4639566 ttcattgtttcttagaaacacatgaaaatgatcaaaaacaccccag 4639521  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 528
Target Start/End: Complemental strand, 28976770 - 28976687
Alignment:
Q  445 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctg 528  Q
    |||||||||||||   |||| ||||||||  |||||| |||||||||||| ||||||||  | | | |||||||||||||||||    
T  28976770 gagaattgcttttctcacatccattgtttcttagaaatacatgaaaatgatcaaaaacattcaaacgatagttaactaccgctg 28976687  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 535
Target Start/End: Original strand, 6706273 - 6706347
Alignment:
Q  461 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 535  Q
    |||||||||||||  || |||||||||||||| ||||||||||   ||||  ||||||||||||| || ||||||    
T  6706273 acattcattgtttcttataaacacatgaaaataaccaaaaacatttcagcggtagttaactaccgttgacttata 6706347  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 501
Target Start/End: Complemental strand, 4192054 - 4192001
Alignment:
Q  448 aattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaa 501  Q
    ||||||| |||  |||| |||||||| ||| |||||||||||||||||||||||    
T  4192054 aattgctgtttacacatccattgtttcctacaaacacatgaaaatgaccaaaaa 4192001  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 502
Target Start/End: Original strand, 8367019 - 8367071
Alignment:
Q  450 ttgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaac 502  Q
    ||||||||| ||||| |||||||| |||||||| |||  ||||||||||||||    
T  8367019 ttgcttttttgacatccattgtttcctagaaacccatagaaatgaccaaaaac 8367071  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 11727258 - 11727230
Alignment:
Q  178 tttagcagctaagaacaaaaaatttgttc 206  Q
    |||||||||||||||||||||||||||||    
T  11727258 tttagcagctaagaacaaaaaatttgttc 11727230  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 461 - 501
Target Start/End: Original strand, 35924595 - 35924635
Alignment:
Q  461 acattcattgttttctagaaacacatgaaaatgaccaaaaa 501  Q
    |||| |||| ||||||||||| |||||||||||||||||||    
T  35924595 acatccattattttctagaaaaacatgaaaatgaccaaaaa 35924635  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 532
Target Start/End: Original strand, 13793669 - 13793751
Alignment:
Q  450 ttgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggctt 532  Q
    ||||| ||| ||||| ||||||||  |||||||| |||| ||||||||||||||||||| |  ||||||||||| | ||||||    
T  13793669 ttgctgttttgacatccattgtttcttagaaacatatgagaatgaccaaaaacaccccaacggtagttaactacggttggctt 13793751  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 502
Target Start/End: Original strand, 37096596 - 37096644
Alignment:
Q  454 tttttggacattcattgttttctagaaacacatgaaaatgaccaaaaac 502  Q
    ||||| ||| |||||||||||||||||||||||| |||||| |||||||    
T  37096596 ttttttgaccttcattgttttctagaaacacatggaaatgatcaaaaac 37096644  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 535
Target Start/End: Complemental strand, 39994590 - 39994520
Alignment:
Q  466 cattgttttctagaaacacatgaaaatga-ccaaaaacaccccagcaatagttaactaccgctggcttata 535  Q
    |||||||||||||||||||||| |||||| ||||||| |  ||| ||| |||||||||||| || ||||||    
T  39994590 cattgttttctagaaacacatggaaatgacccaaaaaaattccaacaacagttaactaccgttgacttata 39994520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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