View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15054_high_19 (Length: 224)
Name: NF15054_high_19
Description: NF15054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15054_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 34904883 - 34905066
Alignment:
| Q |
22 |
ctggctgggatgaagcgccaaaaggtgtaaatatgctgcttccgaatactggttgcgactgttgggtgttacttccaaatgctggttgtgatggttgggt |
121 |
Q |
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| T |
34904883 |
ctggctgggatgaagcgccaaaaggtgttaatatgctgcttccaaatactggttgcgactgttgggtgttacttccaaatgctggttgtgatggttgggt |
34904982 |
T |
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| Q |
122 |
ggcacttccaaatggacttgtttgagtaggagtagagccaaaacctccaaaagcaggcttctgaccaaacgctgatgatcctat |
205 |
Q |
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| T |
34904983 |
ggcacttccaaatggacttgtttgagtaggattagagccaaaacctccaaaagcaggcttctgaccaaacgctgatgatcctat |
34905066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 50 - 205
Target Start/End: Original strand, 34896187 - 34896342
Alignment:
| Q |
50 |
aaatatgctgcttccgaatactggttgcgactgttgggtgttacttccaaatgctggttgtgatggttgggtggcacttccaaatggacttgtttgagta |
149 |
Q |
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| T |
34896187 |
aaatatgctgcttccaaatgctggttgcgactgttgggtgttacttccaaatgctggttgtgatggttgggtggcacttccaaatggacttgtttgagta |
34896286 |
T |
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| Q |
150 |
ggagtagagccaaaacctccaaaagcaggcttctgaccaaacgctgatgatcctat |
205 |
Q |
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| T |
34896287 |
ggagtagagccaaaacctccaaaagcaggcttctgaccaaacactgatgatcctat |
34896342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 89 - 203
Target Start/End: Complemental strand, 28545778 - 28545664
Alignment:
| Q |
89 |
gttacttccaaatgctggttgtgatggttgggtggcacttccaaatggacttgtttgagtaggagtagagccaaaacctccaaaagcaggcttctgacca |
188 |
Q |
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| T |
28545778 |
gttacttccaaatgctggtcgtgatggttggatggcacttctacatggacttgtttgagtaggagtagagccaaaacctacaaaagcaggctcctgacca |
28545679 |
T |
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| Q |
189 |
aacgctgatgatcct |
203 |
Q |
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| T |
28545678 |
aagagtgatgatcct |
28545664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 28543544 - 28543429
Alignment:
| Q |
88 |
tgttacttccaaatgctggttgtgatggttgggtggcacttccaaatggacttgtttgagtaggagtagagccaaaacctccaaaagcaggcttctgacc |
187 |
Q |
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|||| ||||||||| |||||||||||||||| |||||| |||||| |||||| | |||||||| | ||||||||||||||||||| ||||| ||| | |
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| T |
28543544 |
tgttgcttccaaatactggttgtgatggttgtatggcacatccaaaaggacttatctgagtaggcatcgagccaaaacctccaaaagaaggctcctggca |
28543445 |
T |
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| Q |
188 |
aaacgctgatgatcct |
203 |
Q |
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| T |
28543444 |
aaaggatgatgatcct |
28543429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 34910064 - 34910126
Alignment:
| Q |
128 |
tccaaatggacttgtttgagtaggagtagagccaaaacctccaaaagcaggcttctgaccaaa |
190 |
Q |
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| T |
34910064 |
tccaaaaggacttatttgagtaggtgtatagccaaaacctccaaaagcaggcacctgaccaaa |
34910126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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