View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15054_high_3 (Length: 497)
Name: NF15054_high_3
Description: NF15054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15054_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 487
Target Start/End: Complemental strand, 31945126 - 31944658
Alignment:
| Q |
18 |
attgttgcaatggcgcttatggaactccgcagacttgtaagccaagttcatactcgcagttcttcaagagcgcgtgtccacgcgcttatagctatgctta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31945126 |
attgttgcaatggcgcttatggaactccgcagacttgtaagccaagttcatactcgcagttcttcaagagcgcgtgtccacgcgcttatagctatgctta |
31945027 |
T |
|
| Q |
118 |
tgatgatggaactagcaccttcacctgttcctctgcagattacctcattactttctgttctacacattccaaagggtattgtattgtagttcaatcttct |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31945026 |
tgatgatggaactagcaccttcacttgttcctctgcagattacctcattactttctgttctacacattccaaagggtattgtattgtagttcaatcttct |
31944927 |
T |
|
| Q |
218 |
gattttttgttttaagtagaaaatnnnnnnntaactagaaatgtatttgagtgcatgcagttcgatcaagtcagggaccggaaaactcccgtttggagtg |
317 |
Q |
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| T |
31944926 |
gattttttgttttaagtagaaaataaaaaa-taactagaaatgtatttgagtgcatgcagttcgatcaagtcagggaccggaaaactcccgtttggagtg |
31944828 |
T |
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| Q |
318 |
gacatttgggcaggacaagcccatggccatgctgataagtcaaccaaggggatgtctctagttgtggcagcagttttcatgacaatttggtggcagctca |
417 |
Q |
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| T |
31944827 |
gacatttgggcaggacacgcccatggccatgctgataagtcaaccaaggggatgtctctagttgtggcagcagttttcatgacaatttggtggcagctca |
31944728 |
T |
|
| Q |
418 |
gttaggcgtgcggatttagattccatgcagttattgattttgatcgtctagtagtttgtttgtttctgtg |
487 |
Q |
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| T |
31944727 |
gttaggcgtgcggatttaaattccatgcagttattgattttgatcgtctagtagtttgtttgtttctgtg |
31944658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 18954384 - 18954243
Alignment:
| Q |
18 |
attgttgcaatggcgcttatggaactccgcagacttgtaagccaagttcatactcgcagttcttcaagagcgcgtgtccacgcgcttatagctatgctta |
117 |
Q |
| |
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||||||| ||||||||||| | ||||| | || || ||||||||||| ||||| || ||||| ||||| || |||||||| |||||||| |||||||| |
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| T |
18954384 |
attgttgtaatggcgcttacgctactccagatacatgcaagccaagttcgtactcacaattctttaagagtgcatgtccacgtgcttatagttatgctta |
18954285 |
T |
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| Q |
118 |
tgatgatggaactagcaccttcacctgttcctctgcagatta |
159 |
Q |
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| T |
18954284 |
tgatgatggaacaagcactttcgcttgtgcttctgcagatta |
18954243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 14039375 - 14039296
Alignment:
| Q |
56 |
aagccaagttcatactcgcagttcttcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatggaactagcac |
135 |
Q |
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||||||||||||||||| ||||| |||||||| || ||||| |||||||||||||| ||||||||||||| ||| ||||| |
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| T |
14039375 |
aagccaagttcatactcacagtttttcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatgaaacaagcac |
14039296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 8798217 - 8798358
Alignment:
| Q |
18 |
attgttgcaatggcgcttatggaactccgcagacttgtaagccaagttcatactcgcagttcttcaagagcgcgtgtccacgcgcttatagctatgctta |
117 |
Q |
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|||| |||| |||||||||||| | ||| | || ||||| |||||||| ||||||||||| || ||||| |||||||||||||||||||| || ||||| |
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| T |
8798217 |
attgctgcagtggcgcttatggttccccggatacgtgtaaaccaagttcctactcgcagttttttaagagtgcgtgtccacgcgcttatagttacgctta |
8798316 |
T |
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| Q |
118 |
tgatgatggaactagcaccttcacctgttcctctgcagatta |
159 |
Q |
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|||||||||||||||||| ||||| ||| | ||||| ||||| |
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| T |
8798317 |
tgatgatggaactagcactttcacttgtgcttctgctgatta |
8798358 |
T |
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