View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15054_high_6 (Length: 447)

Name: NF15054_high_6
Description: NF15054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15054_high_6
NF15054_high_6
[»] chr4 (3 HSPs)
chr4 (96-233)||(2464463-2464601)
chr4 (90-217)||(6736510-6736629)
chr4 (31-74)||(2464618-2464660)
[»] chr2 (3 HSPs)
chr2 (9-198)||(28173413-28173595)
chr2 (90-232)||(11951637-11951782)
chr2 (90-233)||(2743968-2744109)
[»] scaffold0312 (1 HSPs)
scaffold0312 (90-232)||(18990-19133)
[»] chr1 (1 HSPs)
chr1 (90-232)||(411437-411580)
[»] chr3 (2 HSPs)
chr3 (96-229)||(45227735-45227870)
chr3 (92-233)||(29896665-29896808)
[»] chr7 (1 HSPs)
chr7 (148-233)||(26300141-26300227)
[»] chr6 (1 HSPs)
chr6 (90-233)||(29935083-29935224)


Alignment Details
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 96 - 233
Target Start/End: Complemental strand, 2464601 - 2464463
Alignment:
Q  96 caaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaacaatttt 194  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||    
T  2464601 caaagaaatggtgagtcacaagaattcaatgggagcatgacaaacaaagtggacataatggatgagtgaagttttcaccggtctttatccaaaccatttt 2464502  T
Q  195 taaactaaaaatttcatcctttgtaaactcattcatgct 233  Q
    | ||||||||||||||||||||| |||||||||||||||    
T  2464501 ttaactaaaaatttcatcctttgaaaactcattcatgct 2464463  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 90 - 217
Target Start/End: Original strand, 6736510 - 6736629
Alignment:
Q  90 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaac 188  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||| ||||||||||| || |||||||   |||||         ||||||||| ||||||    
T  6736510 tgaaaccaaagaaatggtgagtcacaagaattcaacgggagcatgacaaacaaagtagaaataatgggtaagtga---------cggtctttacccaaac 6736600  T
Q  189 aatttttaaactaaaaatttcatcctttg 217  Q
    |||||||||||||||| ||||||||||||    
T  6736601 aatttttaaactaaaagtttcatcctttg 6736629  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 2464660 - 2464618
Alignment:
Q  31 aagaagaaaactccaagagatttaatcctttgcaaactgtgaat 74  Q
    |||| ||||||||||||||||| |||||||||||||||||||||    
T  2464660 aagatgaaaactccaagagatt-aatcctttgcaaactgtgaat 2464618  T

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Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 9 - 198
Target Start/End: Complemental strand, 28173595 - 28173413
Alignment:
Q  9 agcataggtgtttttcgtagacaagaagaaaactccaagagatttaatcctttgcaaactgtgaatctnnnnnnnnnnnnntgaaatcaaagaaatggtg 108  Q
    |||||||||||||||| ||||||||||   |||||||||||||||||||||||||||||| ||| |||             |||||||||||||||||||    
T  28173595 agcataggtgtttttcctagacaagaa---aactccaagagatttaatcctttgcaaactctgactctaaaaaaaa-----tgaaatcaaagaaatggtg 28173504  T
Q  109 agtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaacaatttttaaa 198  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  28173503 agtcacaagaattcaatggggtcataacaaacaaagtggacataatggacaagtgaagttttcaccggtctttatccaaacaatttttaaa 28173413  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 90 - 232
Target Start/End: Complemental strand, 11951782 - 11951637
Alignment:
Q  90 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacat--aatggacgagtgaagttttcaccggtcttta-ccaa 186  Q
    ||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||  ||| ||  | ||||  ||||||||||||||| ||||    
T  11951782 tgaaaccaaagaaatggtgagtcacaataattcaatgggagcatgacaaacaaagtggacatttaatagataaatgaaaatttcaccggtctttatccaa 11951683  T
Q  187 acaatttttaaactaaaaatttcatcctttgtaaactcattcatgc 232  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  11951682 acaatttttaaactaaaaatttcatcctttggaaactcattcatgc 11951637  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 2744109 - 2743968
Alignment:
Q  90 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatgg--acgagtgaagttttcaccggtcttta-ccaa 186  Q
    ||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||  | |||||||  | | || ||||      ||||||||| ||||    
T  2744109 tgaaaccaaagaaatggtgagtcacaagaattcaatgggagcatgacaaacaaagtaaaaataatgggtatgggt-aagt----gacggtctttacccaa 2744015  T
Q  187 acaatttttaaactaaaaatttcatcctttgtaaactcattcatgct 233  Q
    |||||||||||||||||| ||||||| |||| |||||||||||||||    
T  2744014 acaatttttaaactaaaagtttcatcatttgaaaactcattcatgct 2743968  T

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Target: scaffold0312 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 90 - 232
Target Start/End: Complemental strand, 19133 - 18990
Alignment:
Q  90 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaac 188  Q
    ||||| ||||||||||||||||||||| ||||||||| || ||| |||||||||||||||||||||||   |||||  ||||||||||||||| ||||||    
T  19133 tgaaaccaaagaaatggtgagtcacaataattcaatgagagcatgacaaacaaagtggacataatggataggtgaaaatttcaccggtctttacccaaac 19034  T
Q  189 aatttttaaactaaaaatttcatcctttgtaaactcattcatgc 232  Q
    |||||||||||||||||||||||| |||| ||||||||||||||    
T  19033 aatttttaaactaaaaatttcatcatttggaaactcattcatgc 18990  T

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Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 90 - 232
Target Start/End: Original strand, 411437 - 411580
Alignment:
Q  90 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaac 188  Q
    ||||| ||||||||||||||||||||| ||||||||| || ||| |||||||||||||||||||||||   |||||  ||||||||||||||| ||||||    
T  411437 tgaaaccaaagaaatggtgagtcacaataattcaatgagagcatgacaaacaaagtggacataatggataggtgaaaatttcaccggtctttacccaaac 411536  T
Q  189 aatttttaaactaaaaatttcatcctttgtaaactcattcatgc 232  Q
    |||||||||||||||||||||||| |||| ||||||||||||||    
T  411537 aatttttaaactaaaaatttcatcatttggaaactcattcatgc 411580  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 45227870 - 45227735
Alignment:
Q  96 caaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtgg-acataatggacgagtgaagttttcaccggtcttta-ccaaacaattt 193  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||| | |||||||   ||||||  ||||||||||||||| |||||||||||    
T  45227870 caaagaaatggtgagtcacaagaattcaatgggagcatgacaaacaaagtggaaaataatgggtaagtgaaaatttcaccggtctttacccaaacaattt 45227771  T
Q  194 ttaaactaaaaatttcatcctttgtaaactcattca 229  Q
    ||||||||| |||||||||||| | || ||||||||    
T  45227770 ttaaactaacaatttcatccttcgaaagctcattca 45227735  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 92 - 233
Target Start/End: Original strand, 29896665 - 29896808
Alignment:
Q  92 aaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtctttaccaaacaa- 190  Q
    |||||||||||||| ||| ||||||||||||||||||| ||| |||||| |||||||||||||||| |||||| ||||||||||||||||| | ||| |     
T  29896665 aaatcaaagaaatgatgaatcacaagaattcaatgggagcatgacaaaccaagtggacataatggatgagtgatgttttcaccggtctttatccaaccat 29896764  T
Q  191 --tttttaaactaaaaatttcatcctttgtaaactcattcatgct 233  Q
      ||||||||||||||| ||||||||||  || ||||||||||||    
T  29896765 tttttttaaactaaaaa-ttcatccttttaaagctcattcatgct 29896808  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 26300141 - 26300227
Alignment:
Q  148 acataatggacgagtgaagttttcaccggtcttta-ccaaacaatttttaaactaaaaatttcatcctttgtaaactcattcatgct 233  Q
    |||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26300141 acataatggatgagtgaagttttcatcggtcattatccaaacaatttttaaactaaaaatttcatcctttgaaaactcattcatgct 26300227  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 29935224 - 29935083
Alignment:
Q  90 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatgg--acgagtgaagttttcaccggtcttta-ccaa 186  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||| |||||||||||  | |||||||  | | || ||||      ||||||||| ||||    
T  29935224 tgaaaccaaagaaatggtaagtcacaagaattcaatgggagcatgacaaacaaagtaaaaataatgggtatgggt-aagt----gacggtctttacccaa 29935130  T
Q  187 acaatttttaaactaaaaatttcatcctttgtaaactcattcatgct 233  Q
    |||||||||||||||||| ||||||| |||| || ||||||||||||    
T  29935129 acaatttttaaactaaaagtttcatcatttgaaagctcattcatgct 29935083  T

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