View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15054_low_12 (Length: 317)
Name: NF15054_low_12
Description: NF15054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15054_low_12 |
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| [»] scaffold0017 (2 HSPs) |
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| [»] scaffold0061 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 35899481 - 35899198
Alignment:
| Q |
18 |
gatccaatgcttgtgggtatttctccaattaatttatttctagcaagatacaccattctcaaagatgataagattgaaagatttggtaacatgccagtaa |
117 |
Q |
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||||||||||| |||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35899481 |
gatccaatgctcgtgggtatttctccaaataatttatttccagcaagatacaacattctcaaagatgataagattgaaagatttggtaacatgccagtaa |
35899382 |
T |
|
| Q |
118 |
tttgattatttgataaggataattcctgtaacgaggatacatttccaatgcagttcgaatagttattatgaactgtaaagtatgaaatatctccgcttaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35899381 |
tttgattatttgataaggataattcctgtaacgaggatacatttccaatgcagttcgaatagttattatgaactgtaaagtatgaaatatctccgcttaa |
35899282 |
T |
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| Q |
218 |
gcggttatcattagcccaaaagctcttcaatgtacatatgttcccaatagatgtagggatcttgccttctaaactattgccatc |
301 |
Q |
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| T |
35899281 |
gcggttatcattagcccaaaagctcttcaatgtacatatgttcccaataaatgtagggatcttgccttctaaactattgccatc |
35899198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 44612895 - 44612731
Alignment:
| Q |
18 |
gatccaatgcttgtgggtatttctccaattaatttatttctagcaagatacaccattctcaaagatgataagattgaaagatttggtaacatgccagtaa |
117 |
Q |
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| T |
44612895 |
gatccgatgctcgcgggtatttctccagttaatttattgacattaagaaccaacagtctcaaagacgagaggattgaaaggtctggtaacttgcccgaaa |
44612796 |
T |
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| Q |
118 |
tttgattatttgataaggataattcctgtaacgaggatacatttccaatgcagttcgaatagtta |
182 |
Q |
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| T |
44612795 |
tctcattattccatagccatagttcctgtaacgatgatagatttccaatgcagtgagaatagtta |
44612731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 11544310 - 11544347
Alignment:
| Q |
18 |
gatccaatgcttgtgggtatttctccaattaatttatt |
55 |
Q |
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||||||||||| |||||||||||||||||||| ||||| |
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| T |
11544310 |
gatccaatgctcgtgggtatttctccaattaaattatt |
11544347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 16818316 - 16818268
Alignment:
| Q |
122 |
attatttgataaggataattcctgtaacgaggatacatttccaatgcag |
170 |
Q |
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| T |
16818316 |
attatttgataaggatagtacctgtagtgaggatacatttccagtgcag |
16818268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 288
Target Start/End: Complemental strand, 8342770 - 8342506
Alignment:
| Q |
24 |
atgcttgtgggtatttctccaattaatttatttctagcaagatacaccattctcaaagatgataagattgaaagatttggtaacatgccagtaatttgat |
123 |
Q |
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||||| |||||||||||||||||||||||||||| | |||| || ||||||||||||| || |||||| | ||||||||||| | |||||||| |
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| T |
8342770 |
atgctcgtgggtatttctccaattaatttatttccatcaagtatcaattccctcaaagatgataggactgaaaggtcaggtaacatgcccgaaatttgat |
8342671 |
T |
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| Q |
124 |
tatttgataaggataattcctgtaacgaggatacatttccaatgcagttcgaatagttattatgaactgtaaagtatgaaatatctccgcttaagcggtt |
223 |
Q |
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||| |||||||||| ||||||| ||||||||||||||| ||||| | || ||||||||||| | || | |||||| |||||||| ||| |||| |
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| T |
8342670 |
tatacgataaggatagctcctgtagcgaggatacatttccgatgcaatgagagtagttattatggatgatagaacctgaaatttctccgctcaagtggtt |
8342571 |
T |
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| Q |
224 |
atcattagcccaaaagctcttcaatgtacatatgttcccaatagatgtagggatcttgccttcta |
288 |
Q |
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|||| ||| ||| |||| ||| || ||||| |||||||| ||| | ||||| |||||||||| |
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| T |
8342570 |
atcaaaagcttcaaatctctccaaggtgcatatattcccaatggattttgggatattgccttcta |
8342506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 174609 - 174445
Alignment:
| Q |
17 |
cgatccaatgcttgtgggtatttctccaattaatttatttctagcaagatacaccattctcaaagatgataagattgaaagatttggtaacatgccagta |
116 |
Q |
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|||||| ||||| ||| |||||||||||||||||||||| ||||||||||| | |||||||||||| | |||||||| | |||||| ||| | | |
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| T |
174609 |
cgatccgatgctagtgtgtatttctccaattaatttattatcagcaagatacaactgtctcaaagatgagagaattgaaaggtccggtaac-ggcccgaa |
174511 |
T |
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| Q |
117 |
atttgattatttgataaggataattcctgtaacgaggatacatttccaatgcagttcgaatagtta |
182 |
Q |
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|| | |||||||||||| ||| |||||||| || |||| |||| ||||||||| ||||||||| |
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| T |
174510 |
atctcattatttgataaatctaaatcctgtaaggatgatagattttcaatgcagtgggaatagtta |
174445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 169702 - 169554
Alignment:
| Q |
18 |
gatccaatgcttgtgggtatttctccaattaatttatt-tctagcaagatacaccattctcaaagatgataagattgaaagatttggtaacatgccagta |
116 |
Q |
| |
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||||| ||||| |||||||||||||||||||||||||| || | ||||| || || |||||||||||| | | |||||| | ||||||||||| | | |
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| T |
169702 |
gatccgatgctcgtgggtatttctccaattaatttattgtcca-caagactcaacagtctcaaagatgagaggtttgaaaagtccggtaacatgcctgaa |
169604 |
T |
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| Q |
117 |
atttgattatttgataaggataattcctgtaacgaggatacatttccaat |
166 |
Q |
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|| | |||||| ||||| ||| |||||||||| | |||||||| ||||| |
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| T |
169603 |
atctcattattcgataaccatagttcctgtaacaatgatacattaccaat |
169554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 29090 - 29238
Alignment:
| Q |
18 |
gatccaatgcttgtgggtatttctccaattaatttatt-tctagcaagatacaccattctcaaagatgataagattgaaagatttggtaacatgccagta |
116 |
Q |
| |
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||||| ||||| |||||||||||||||||||||||||| || | ||||| || || |||||||||||| | | |||||| | ||||||||||| | | |
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| T |
29090 |
gatccgatgctcgtgggtatttctccaattaatttattgtcca-caagactcaacagtctcaaagatgagaggtttgaaaagtccggtaacatgcctgaa |
29188 |
T |
|
| Q |
117 |
atttgattatttgataaggataattcctgtaacgaggatacatttccaat |
166 |
Q |
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|| | |||||| ||||| ||| |||||||||| | |||||||| ||||| |
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| T |
29189 |
atctcattattcgataaccatagttcctgtaacaatgatacattaccaat |
29238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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