View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15054_low_14 (Length: 314)
Name: NF15054_low_14
Description: NF15054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15054_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 296
Target Start/End: Original strand, 2926097 - 2926380
Alignment:
| Q |
13 |
aaaatctctaccacaacaacaacaagaacaaaccctactttttccttggttgataagagttagccaaagcacgtgtggccaaactgaattcttccaccca |
112 |
Q |
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| T |
2926097 |
aaaatctctaccacaaaaacaacaagaacaaaccctacttttcccttggttgataagagttagccaaaatacgcgtggccaaactcaattcttccaccca |
2926196 |
T |
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| Q |
113 |
ctcctcaattatgcccctctttcttgtaatagccttgtgctcgattttaacaaattatatgtcatccccttgggaagtaacattttcatttgggactatg |
212 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2926197 |
ctcctcaattatgcccctctttcttgtaatagtcttgtgcttgattttaacaaattatatgtcatccccttgggaagtaacattttcatttgggactatg |
2926296 |
T |
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| Q |
213 |
acatcgaaaaggaaaatatagcccacaattgtttctacatgttccctgaaaaggttgttgttgtcacgtgccatgggaaaaacc |
296 |
Q |
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| T |
2926297 |
acatcgaaaaggaaaatatagcccacaattgtttctacatgttccctgaaaaggttgttgttgtcacgtgccatgggaaaaacc |
2926380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 7042172 - 7041992
Alignment:
| Q |
22 |
accacaacaacaacaagaacaaaccctactttttccttggttgataagagttagccaaagcacgtgtggccaaactgaattcttccacccactcctcaat |
121 |
Q |
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| T |
7042172 |
accacaacaacaacaacaacaaactctacttcgcccttggttgataagagtttgccaaaacacgcgtggccaaacccaattattccacccactcttccat |
7042073 |
T |
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| Q |
122 |
tatgcccctctttcttgtaatagccttgtgctcgattttaacaaattatatgtcatccccttgggaagtaacattttcatt |
202 |
Q |
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| T |
7042072 |
cactaccctcttcctcgtatccgtcttgtgctcgatttcaacaaattatctgtcctccatttgggaagcaacaatttcatt |
7041992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 7047514 - 7047426
Alignment:
| Q |
26 |
caacaacaacaagaacaaaccctactttttccttggttgataagagttagccaaagcacgtgtggccaaactgaattcttccacccact |
114 |
Q |
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||||||||| || |||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||||| ||| ||||||||||| |
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| T |
7047514 |
caacaacaagaacaacaaaccctacttcgcccttggttgataagagttagccaaaacacgcgtggcaaaactcgatttttccacccact |
7047426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 7047293 - 7047244
Alignment:
| Q |
247 |
ctacatgttccctgaaaaggttgttgttgtcacgtgccatgggaaaaacc |
296 |
Q |
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| T |
7047293 |
ctacatgttccctgaaaaggtcattgctgtcacgtgccatggaaaaaacc |
7047244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 7013306 - 7013260
Alignment:
| Q |
248 |
tacatgttccctgaaaaggttgttgttgtcacgtgccatgggaaaaa |
294 |
Q |
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||||||| |||| ||||||| |||||||| ||||||||||||||||| |
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| T |
7013306 |
tacatgtaccctaaaaaggtcgttgttgttacgtgccatgggaaaaa |
7013260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 7026242 - 7026196
Alignment:
| Q |
248 |
tacatgttccctgaaaaggttgttgttgtcacgtgccatgggaaaaa |
294 |
Q |
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||||||| |||| ||||||| |||||||| ||||||||||||||||| |
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| T |
7026242 |
tacatgtaccctaaaaaggtcgttgttgttacgtgccatgggaaaaa |
7026196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 3676285 - 3676237
Alignment:
| Q |
247 |
ctacatgttccctgaaaaggttgttgttgtcacgtgccatgggaaaaac |
295 |
Q |
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| T |
3676285 |
ctacatgtaccctaaaaaggtcgttgttgtcacatgccatggaaaaaac |
3676237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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