View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15054_low_15 (Length: 301)
Name: NF15054_low_15
Description: NF15054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15054_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 15874248 - 15874544
Alignment:
| Q |
1 |
catcctcagtgaacatattcttcacattttcaatattatcttcaatcattttaagcaaaagcttacatgcttcgttatcatctttatcaattgttttgcc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
15874248 |
catcctcagtgaacatattcttcacattttcaatattatcttcaatctttttaagcaaaagcttacatgcttcgttatcatctttatcaatttttttggc |
15874347 |
T |
|
| Q |
101 |
ataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagactttcattcttgtgatgaataggaccaaataatataatcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| ||||||||||| |
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| T |
15874348 |
ataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagatttttagcattgtgatgaataggaccaaatgatataatcttt |
15874447 |
T |
|
| Q |
201 |
ggtttacaatacttataaaatctttccttttgccgcaaaaacattggaaccctttggatcttaggaatcgaaatttgattatttcgatcaaaccttt |
297 |
Q |
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||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15874448 |
ggtgaacaatacttataaaatctttcattttgccgcaaaaatattggaaccctttggatcttaggaatcgaaattcgattatttcgatcaaaccttt |
15874544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 15899821 - 15899525
Alignment:
| Q |
1 |
catcctcagtgaacatattcttcacattttcaatattatcttcaatcattttaagcaaaagcttacatgcttcgttatcatctttatcaattgttttgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||| |
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| T |
15899821 |
catcctcagtgaacatattcttcaaatcttcaatattatcttcaatctttttaagcaaaagcatacatgcttcgttagcatctttatcaatttttttgcc |
15899722 |
T |
|
| Q |
101 |
ataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagactttcattcttgtgatgaataggaccaaataatataatcttt |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| ||||||||||| |
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| T |
15899721 |
ataatcagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagatttttagcattgtgatgaataggaccaaatgatataatcttt |
15899622 |
T |
|
| Q |
201 |
ggtttacaatacttataaaatctttccttttgccgcaaaaacattggaaccctttggatcttaggaatcgaaatttgattatttcgatcaaaccttt |
297 |
Q |
| |
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||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||| |
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| T |
15899621 |
ggtgtacaatacttataaaatctttcattttgccgcaaaaacattggaaccctttggatcctaggaatcaaaatttcattatttcgatcaaaccttt |
15899525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 15920849 - 15920553
Alignment:
| Q |
1 |
catcctcagtgaacatattcttcacattttcaatattatcttcaatcattttaagcaaaagcttacatgcttcgttatcatctttatcaattgttttgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||| |
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| T |
15920849 |
catcctcagtgaacatattcttcaaatattcaatattatcttcaatctttttaagcaaaagcatacatgcttcgttaacatctttatcaatttttttgcc |
15920750 |
T |
|
| Q |
101 |
ataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagactttcattcttgtgatgaataggaccaaataatataatcttt |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| ||||||||||| |
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| T |
15920749 |
ataataagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagatttttagcattgtgatgaataggaccaaatgatataatcttt |
15920650 |
T |
|
| Q |
201 |
ggtttacaatacttataaaatctttccttttgccgcaaaaacattggaaccctttggatcttaggaatcgaaatttgattatttcgatcaaaccttt |
297 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||| |
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|
| T |
15920649 |
ggtgtacaatacttataaaatctttcattttgccgcaaaaacattggaaccctttggatcctaggaatcaaaatttcattatttcgatcaaaccttt |
15920553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 14060663 - 14060955
Alignment:
| Q |
1 |
catcctcagtgaacatattcttcacattttcaatattatcttcaatcattttaagcaaaagcttacatgcttcgttatcatctttatcaattgttttgcc |
100 |
Q |
| |
|
|||| ||||||||||| ||||||| | ||||||||||||||||||| | ||||||||||| || ||||||| |||| |||||| || ||| |||||| |
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| T |
14060663 |
catcttcagtgaacatgttcttcaattcttcaatattatcttcaatcttgttaagcaaaagtttgcatgcttggttaccatcttgattgatttctttgcc |
14060762 |
T |
|
| Q |
101 |
ataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagactttcattcttgtgatgaataggaccaaataatataatcttt |
200 |
Q |
| |
|
||| | ||| |||| | || ||||||||||| ||||| |||||||||||||| |||| || ||| |||||||| || ||||||||| ||||||||||| |
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| T |
14060763 |
atattcctcaagaaatgtagaggtccatagaagtttgtactgctctccttctttaagacatttattattgtgatggatcggaccaaatgatataatcttt |
14060862 |
T |
|
| Q |
201 |
ggtttacaatacttataaaatctttccttttgccgcaaaaacattggaaccctttggatcttaggaatcgaaatttgattatttcgatcaaac |
293 |
Q |
| |
|
||| |||||||||||||||||||| ||||| ||||||||| | ||||||||||| ||||||||||| ||||||| | ||||| | |||||| |
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| T |
14060863 |
ggtgagcaatacttataaaatctttcattttgtcgcaaaaacttaggaaccctttgaatcttaggaattgaaattttactattttgctcaaac |
14060955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 293
Target Start/End: Original strand, 14049300 - 14049570
Alignment:
| Q |
9 |
gtgaacatattcttcacattttcaatattatcttcaatcattttaagcaaaagcttacatgcttcgttatcatctttatcaattgttttgccataattag |
108 |
Q |
| |
|
|||||||| ||||||| | | ||||||||||||||||| | ||||||||||| || || |||| || |||||| || ||| ||||||||| | |
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| T |
14049300 |
gtgaacatgttcttcaattctacaatattatcttcaatcttgttaagcaaaagtttgcaggcttggtggccatcttgattgatttgtttgccatattcct |
14049399 |
T |
|
| Q |
109 |
caacaaatattgatgtccatagaagcttgtaatgctctccttctttcagactttcattcttgtgatgaataggaccaaataatataatctttggtttaca |
208 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||||||||||||| |||| |||| | |||||||| || ||||||||| | ||||| |
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| T |
14049400 |
caacaaatgtagatgtccacagaagcttgtaatgctctccttctttaagacattcactattgtgatggatgggaccaaatgagataat------------ |
14049487 |
T |
|
| Q |
209 |
atacttataaaatctttccttttgccgcaaaaacattggaaccctttggatcttaggaatcgaaatttgattatttcgatcaaac |
293 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||| ||||||||||||||||||||||||| ||||||||| ||||| | |||||| |
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| T |
14049488 |
--acttataaaatctttcattttgtctcaaaaactttggaaccctttggatcttaggaattgaaatttgactattttgctcaaac |
14049570 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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