View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15054_low_19 (Length: 242)
Name: NF15054_low_19
Description: NF15054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15054_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 26301592 - 26301807
Alignment:
| Q |
19 |
ggtaagtatgaagacggagaagatcttgccgacataattgttaacaattgcacatttaatggcacgagtaatggagttagaatcaaatcatatgagtcac |
118 |
Q |
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| T |
26301592 |
ggtaagtatgaagacgaagaagatcttgccgacataattgttaagaattgcacatttaatggtacgagtaatggagttagaatcaaatcatatgagtcac |
26301691 |
T |
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| Q |
119 |
aattgaacaaaaccgttgttgcttctaatttcatatatgaggatattgtgatggaaaatgtggagtattccattgtaattgatcaacattattgtccgaa |
218 |
Q |
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| T |
26301692 |
aattgaacaaaaccgtggttgcttctaatttcatatatgaggatattgtgatggaaaatgtggagtatcacattgtaattgatcaacattattgttcaaa |
26301791 |
T |
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| Q |
219 |
ttcagaggagtataat |
234 |
Q |
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| T |
26301792 |
ttcaggggagtgtaat |
26301807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 213
Target Start/End: Original strand, 11532510 - 11532667
Alignment:
| Q |
56 |
ttgttaacaattgcacatttaatggcacgagtaatggagttagaatcaaatcatatgagtcacaattgaacaaaaccgttgttgcttctaatttcatata |
155 |
Q |
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| T |
11532510 |
ttgttaagaattgtacctttaatggcacaagtaacggtgttagaatcaaatcgtgggagtctcaattgaagaaaactttggttgtttctaattttacata |
11532609 |
T |
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| Q |
156 |
tgaggatattgtgatggaaaatgtggagtattccattgtaattgatcaacattattgt |
213 |
Q |
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| T |
11532610 |
tgaagatattgtgatgaataatgtgcaaaatcccattgtcattgatcaagattattgt |
11532667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 201
Target Start/End: Original strand, 26886135 - 26886298
Alignment:
| Q |
38 |
aagatcttgccgacataattgttaacaattgcacatttaatggcacgagtaatggagttagaatcaaatcatatgagtcacaattgaacaaaaccgttgt |
137 |
Q |
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| T |
26886135 |
aagatcttgatgacatagttgttaaaaattgcacccttagtggtacaagtattgatgttagaatcaaatcatgggagtctcagttgaagtaaactttggt |
26886234 |
T |
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| Q |
138 |
tgcttctaatttcatatatgaggatattgtgatggaaaatgtggagtattccattgtaattgat |
201 |
Q |
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| T |
26886235 |
tgcttttaattttatatataaagatattgtgatggataatgtgcaataccccattgtcattgat |
26886298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 201
Target Start/End: Original strand, 26883728 - 26883891
Alignment:
| Q |
38 |
aagatcttgccgacataattgttaacaattgcacatttaatggcacgagtaatggagttagaatcaaatcatatgagtcacaattgaacaaaaccgttgt |
137 |
Q |
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| T |
26883728 |
aagatcttgatgacataattgttacaaattgtacctttagtggtacaagtattgatgttagaatcaaatcatgaaagtctcaattgaagtaaactttggt |
26883827 |
T |
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| Q |
138 |
tgcttctaatttcatatatgaggatattgtgatggaaaatgtggagtattccattgtaattgat |
201 |
Q |
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| T |
26883828 |
tgcttttaattttgtatataaagatattgtggtggataatgtgcaatatcccattgtcattgat |
26883891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 201
Target Start/End: Original strand, 26884428 - 26884591
Alignment:
| Q |
38 |
aagatcttgccgacataattgttaacaattgcacatttaatggcacgagtaatggagttagaatcaaatcatatgagtcacaattgaacaaaaccgttgt |
137 |
Q |
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| T |
26884428 |
aagatcttgatgacataattgttacaaattgtacctttagtggtacaagtattgatgttagaatcaaatcatggaagtctcaattgaagtaaactttggt |
26884527 |
T |
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| Q |
138 |
tgcttctaatttcatatatgaggatattgtgatggaaaatgtggagtattccattgtaattgat |
201 |
Q |
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| T |
26884528 |
tgcttttaattttgtatataaagatattgtggtggataatgtgcaatatcccattgtcattgat |
26884591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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