View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15054_low_20 (Length: 242)
Name: NF15054_low_20
Description: NF15054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15054_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 38564862 - 38565087
Alignment:
| Q |
1 |
cttaattgcgaatggtttgttttctgatttgattattactcttaatgtagattccacaatctttgttacaatttggagaaaccaaaataagcaagagatt |
100 |
Q |
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| T |
38564862 |
cttaattgcgaatggtttgttttctgatttgattattactcttaatgtagattccacaatctttgttacaatttggagaaaccaaaataagcaagagatt |
38564961 |
T |
|
| Q |
101 |
gaaagcgtttgtggacggatccatgagcgatgtggaaacagatcctcaattgtgggatcttgaaattggaagtgagacttgggagcttctacattctgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38564962 |
gaaagcgtttgtggacggatccatgagcgatgtggaaacagatcctcaattgtgggatcttgaaattggaagtgagacttgggagcttctacattctgta |
38565061 |
T |
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| Q |
201 |
gtaaccaagagtttaccataaatcct |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
38565062 |
gtaaccaagagtttaccataaatcct |
38565087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 38608013 - 38608230
Alignment:
| Q |
1 |
cttaattgcgaatggtttgttttctgatttgattattactcttaatgtagattccacaatctttgttacaatttggagaaaccaaaataagcaagagatt |
100 |
Q |
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|||| ||| ||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
38608013 |
cttagttgggaatggtttattttctgatttgattattacttttaatgtagataccacaatctttgttgcaatttggagaaaccaaaataagtgagagatt |
38608112 |
T |
|
| Q |
101 |
gaaagcgtttgtggacggatccatgagcgatgtggaaacagatcctcaattgtgggatcttgaaattggaagtgagacttgggagcttctacattctgta |
200 |
Q |
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| T |
38608113 |
gaaagcatttgtgaacggatctgtgagtgatgtggaaacagagcctctattgtgggatcttgaaattggaagtgagagttgggagcttctacattctgta |
38608212 |
T |
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| Q |
201 |
gtaaccaagagtttacca |
218 |
Q |
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|||||||||||||||||| |
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| T |
38608213 |
gtaaccaagagtttacca |
38608230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 38616621 - 38616423
Alignment:
| Q |
16 |
tttgttttctgatttgattattactcttaatgtagattccacaatctttgttacaatttggagaaaccaaaataagcaagagattgaaagcgtttgtgga |
115 |
Q |
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||||||||||||||||||||||||| || ||| ||||||| ||| |||||||||||||||||| |||||||||||| |||| ||||||| ||||||| | |
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| T |
38616621 |
tttgttttctgatttgattattacttttgatgcagattccgcaaactttgttacaatttggagcaaccaaaataagtgagaggttgaaagagtttgtgaa |
38616522 |
T |
|
| Q |
116 |
cggatccatgagcgatgtggaaacagatcctcaattgtgggatcttgaaattggaagtgagacttgggagcttctacattctgtagtaaccaagagttt |
214 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||| |
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| T |
38616521 |
cggatccatgagcgatgtggaaacagaatctcaagtgtgggatcttgaaattggaagtgagagttgggagcttctacactatgtggtaaccaagagttt |
38616423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 38582841 - 38583049
Alignment:
| Q |
10 |
gaatggtttgttttctgatttgattattactcttaatgtagattccacaatctttgttacaatttggagaaaccaaaataagcaagagattgaaagcgtt |
109 |
Q |
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||||| ||||||||||||||||||||||||| || ||| ||||||| ||| |||||||||||||||||| || |||||||| ||||||||||||| || |
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| T |
38582841 |
gaatgatttgttttctgatttgattattacttttgatgcagattccgcaaactttgttacaatttggagcaatgaaaataagtcagagattgaaagcatt |
38582940 |
T |
|
| Q |
110 |
tgtggacggatccatgagcgatgtggaaacagatcctcaattgtgggatcttgaaattggaagtgagacttgggagcttctacattctgtagtaaccaag |
209 |
Q |
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|||| | ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| | |
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| T |
38582941 |
tgtgaatggatcgatgagcgatgtggaaacagggcctttattgtgggatcttgaaattggaagtgagagttgggagcttctagattctatagtaaccatg |
38583040 |
T |
|
| Q |
210 |
agtttacca |
218 |
Q |
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||||||||| |
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| T |
38583041 |
agtttacca |
38583049 |
T |
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